Numerical aspects of large-scale electronic state calculation are explored on flexible organic device materials. Physical theory, numerical method and real application studies are discussed in the context of application-algorithmarchitecture co-design. An application study was carried out for disordered organic thin film. Participation ratio, a measure for the spatial extension of electronic wavefunction is focused on, since it is crucial for device property. A data scientific research is reported for a classification problem of disordered The present research was partially supported by JST-CREST project of 'Development of an Eigen-Supercomputing Engine using a Post-Petascale Hierarchical Model', Priority Issue 7 of the post-K project and KAKENHI funds (16KT0016,17H02828). Oakforest-PACS was used through the JHPCN Project (jh170058-NAHI) and through Interdisciplinary Computational Science Program in Center for Computational Sciences, University of Tsukuba. The K computer was used in the HPCI System Research Projects (hp180079, hp180219). Several computations were carried out also on the facilities of the Supercomputer Center,