Roseomonas sediminicola sp. nov., isolated from fresh water

He, Dan; Kim, Jin-Kwang; Jiang, Xiao-Ye; Park, Hye-Yoon; Sun, Changkai; Yu, Hong-San; Yoon, Min-Ho; Kim, Sun-Chang; Jin, Feng Xie; Im, Wan Taek

doi:10.1007/s10482-013-0065-4

Cited by 20 publications

(12 citation statements)

References 21 publications

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“…In addition to being associated with human clinical samples, Roseomonas spp. were also isolated from various sources like soil (Kim and Ka, 2014), sediment (He et al, 2014), sludges (Wang et al, 2016), contaminated soil (Subhash and Lee, 2018), freshwater (Baik et al, 2012), and also human sources like blood (Rihs et al, 1993; Figure 1).…”

Section: Coccoidmentioning

confidence: 99%

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Phylotaxogenomics for the Reappraisal of the Genus Roseomonas With the Creation of Six New Genera

et al. 2021

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The genus Roseomonas is a significant group of bacteria which is invariably of great clinical and ecological importance. Previous studies have shown that the genus Roseomonas is polyphyletic in nature. Our present study focused on generating a lucid understanding of the phylogenetic framework for the re-evaluation and reclassification of the genus Roseomonas. Phylogenetic studies based on the 16S rRNA gene and 92 concatenated genes suggested that the genus is heterogeneous, forming seven major groups. Existing Roseomonas species were subjected to an array of genomic, phenotypic, and chemotaxonomic analyses in order to resolve the heterogeneity. Genomic similarity indices (dDDH and ANI) indicated that the members were well-defined at the species level. The Percentage of Conserved Proteins (POCP) and the average Amino Acid Identity (AAI) values between the groups of the genus Roseomonas and other interspersing members of the family Acetobacteraceae were below 65 and 70%, respectively. The pan-genome evaluation depicted that the pan-genome was an open type and the members shared 958 core genes. This claim of reclassification was equally supported by the phenotypic and chemotaxonomic differences between the groups. Thus, in this study, we propose to re-evaluate and reclassify the genus Roseomonas and propose six novel genera as Pararoseomonas gen. nov., Falsiroseomonas gen. nov., Paeniroseomonas gen. nov., Plastoroseomonas gen. nov., Neoroseomonas gen. nov., and Pseudoroseomonas gen. nov.

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Section: Coccoidmentioning

confidence: 99%

“…Basonym: Roseomonas sediminicola (He et al, 2019) The description is the same as that of Roseomonas sediminicola as given by He et al (2014). JQ349047 is the accession number for the 16S rRNA gene sequence.…”

Section: Description Of Neoroseomonas Sediminicola Comb Novmentioning

confidence: 99%

Phylotaxogenomics for the Reappraisal of the Genus Roseomonas With the Creation of Six New Genera

et al. 2021

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“…The major fatty acids in strain ROY-5-3 T were summed feature 8 (C 18 : 1 ω 7 c/ C 18 : 1 ω 6 c , 48.0%), followed by summed feature 3 (C 16 : 1 ω 6 c/ C 16 : 1 ω7 c , 23.2%) and C 16 : 0 (10.9%), which were generally present in other members of the genus Roseomonas [3–18]. Characteristically, strain ROY-5-3 T contained more summed feature 3 and less summed feature 8 than other closely related taxa and strain ROY-5-3 T was distinct from R.…”

Section: Introductionmentioning

confidence: 99%

“…Roseomonas, a member of the family Acetobacteraceae within the order Rhodospirillales and class Alphaproteobacteria, was proposed by Rihs et al [1]. Roseomonas strains were initially isolated from human samples such as blood, wounds, sputum and exudates [1][2][3][4], but they were later isolated from other environmental samples such as air [5,6], soil [7][8][9][10], water [11,12], sediments [13,14], rhizosphere [15,16] and phyllosphere [17,18]. Recently, species of Roseomonas have also been isolated from aquatic sources, such as coral [19] and algae [20].…”

Section: Introductionmentioning

confidence: 99%

Roseomonas oleicola sp. nov., isolated from an oil production mixture in Yumen Oilfield, and emended description of Roseomonas frigidaquae

Liu

Zhou

et al. 2021

International Journal of Systematic and Evolutionary Microbiology

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A pink, ovoid-shaped, Gram-stain-negative, strictly aerobic and motile bacterial strain, designated ROY-5-3T, was isolated from an oil production mixture from Yumen Oilfield in PR China. The strain grew at 4–42 °C (optimum, 30 °C), at pH 5–10 (optimum, 7) and with 0–5 % (w/v) NaCl (optimum, 0%). The results of phylogenetic analysis based on 16S rRNA gene sequences indicated that ROY-5-3T belongs to the genus Roseomonas and shared the highest pairwise similarities with Roseomonas frigidaquae CW67T (98.1%), Roseomonas selenitidurans BU-1T (97.8%), Roseomonas tokyonensis K-20T (97.7%) and Roseomonas stagni HS-69T (97.3%). The average nucleotide identity and digital DNA–DNA hybridization values between ROY-5-3T and other related type strains of Roseomonas species were less than 84.08 and 28.60 %, respectively, both below the species delineation threshold. Pan-genomic analysis showed that the novel isolate ROY-5-3T shared 3265 core gene families with the four closely related type strains in Roseomonas , and the number of strain-specific gene families was 513. The major fatty acids were identified as summed feature 8 (C18 : 1 ω6c/C18 : 1 ω7c), summed feature 3 (C16 : 1 ω6c/C16 : 1 ω7c) and C16 : 0. Strain ROY-5-3T contained Q-10 as the main ubiquinone and the genomic DNA G+C content was 69.8 mol%. The major polar lipids were diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine and phosphatidylglycerol. Based on the phylogenetic, morphological, physiological, chemotaxonomic and genome analyses, strain ROY-5-3T represents a novel species of the genus Roseomonas for which the name Roseomonas oleicola sp. nov. is proposed. The type strain is ROY-5-3T (=CGMCC 1.13459T =KCTC 82484T).

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“…(Sánchez-Porro et al, 2009;Kim et al, 2013). Members of the genus Roseomonas are widely distributed in various environments, such as drinking water distribution systems (Gallego et al, 2006;He et al, 2014), freshwater lake sediment (Jiang et al, 2006), soil (Yoon et al, 2007;Kim & Ka, 2014. ) and air (Yoo et al, 2008;Kim et al, 2013).…”

mentioning

confidence: 99%

Roseomonas arctica sp. nov., isolated from arctic glacial foreland soil

Qiu

Jiang

et al. 2016

International Journal of Systematic and Evolutionary Microbiology

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A novel psychrotolerant bacterium, designed strain M6-79 T , was isolated from an arctic glacial foreland soil sample collected from Ny-Å lesund in the Svalbard Archipelago, Norway. Cells of strain M6-79 T were Gram-stain-negative, rod-shaped and produced a red-pigment. Strain M6-79 T was strictly aerobic, non-motile, non-endospore-forming, oxidase-negative and catalase-positive. Based on 16S rRNA gene sequence analysis, strain M6-79 T was phylogenetically related to Roseomonas aquatica TR53 T (95.2 % 16S rRNA gene sequence similarity), Roseomonas lacus TH-G33 T (94.3 %), 'Roseomonas sediminicola' FW-3 (94.3 %), Roseomonas terrae DS-48 T (94.1 %) and Roseomonas soli 5N26 T (94.1 %). The unique isoprenoid quinone detected in strain M6-79 T was Q-9. The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, one unknown aminolipid and one unknown lipid. Strain M6-79 T possessed C 18 : 1 v7c, C 16 : 0 and summed feature 3 (C 16 : 1 v6c and/or C 16 : 1 v7c) as the predominant fatty acids, and the DNA G+C content was 71.2 mol%. Combined data from phylogenetic, phenotypic and chemotaxonomic studies revealed that strain M6-79 T represents a novel species of the genus Roseomonas, for which the name Roseomonas arctica sp. nov. is proposed. The type strain is strain M6-79 T (5CCTCC AB 2013101 T 5LMG 28251 T ).

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Roseomonas sediminicola sp. nov., isolated from fresh water

Cited by 20 publications

References 21 publications

Phylotaxogenomics for the Reappraisal of the Genus Roseomonas With the Creation of Six New Genera

Phylotaxogenomics for the Reappraisal of the Genus Roseomonas With the Creation of Six New Genera

Roseomonas oleicola sp. nov., isolated from an oil production mixture in Yumen Oilfield, and emended description of Roseomonas frigidaquae

Roseomonas arctica sp. nov., isolated from arctic glacial foreland soil

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