Insulin and juvenile hormone signaling direct entry of the mosquito Culex pipiens into its overwintering adult diapause, and these two critical signaling pathways appear to do so by converging on the regulation of forkhead transcription factor (FOXO). Diapause is a complex phenotype, and FOXO emerges as a prime candidate for activating many of the diverse physiological pathways that generate the diapause phenotype. Here, we used ChIP sequencing to identify direct targets of FOXO. The nearest gene in a 10-kb region surrounding a predicted binding site was extracted for each binding site, resulting in a dataset containing genes potentially regulated by FOXO. By selecting candidate genes based on their functional relevance to diapause, we identified five gene categories of potential interest, including stress tolerance, metabolic pathways, lifespan extension, cell cycle and growth regulation, and circadian rhythms. Twelve targets were prioritized for further analysis, 10 of which were validated by ChIP-quantitative PCR and quantitative real-time PCR. These 10 genes activated by FOXO are highly up-regulated during diapause and are thus strong candidates for implementation of the diapause syndrome.diapause | Culex pipiens | forkhead transcription factor | insulin D iapause is a complex phenotype characterized not only by its hallmark trait of arrested development, but also by switches in behavior, suppressed metabolism, and enhanced responses to a range of environmental insults (1, 2). In the mosquito Culex pipiens, the diapause syndrome encompasses a cessation of reproductive maturation, a switch from blood feeding to sugar feeding, migration to protective overwintering sites, suppression of metabolism, and enhanced stress responses to combat low temperature, desiccation, and pathogens (3-7). These characteristics are indeed diverse, and it is not at all clear how the major hormonal signals that govern diapause are translated into the suite of features that comprise the diapause phenotype. A shutdown in the production of juvenile hormone (JH) is a nearly universal endocrine mechanism for insect diapauses that occur in the adult stage (8), and, more recently, the insulin signaling (IS) pathway has also been implicated in diapause regulation (9-12). The JH and IS pathways merge, as shown in Fig. 1. The IS pathway is linked to stimulation of the corpora allata to produce JH, and the IS and JH signaling pathways appear to collaboratively mediate expression of the forkhead transcription factor (FOXO). In the absence of IS and JH signaling, FOXO is activated, and this activation is critical for fat accumulation (13), cessation of ovarian development (9), and the elevated antioxidant responses (14) associated with diapause in Cx. pipiens. The genetic pathway involving IS and FOXO appears to also play a critical role in regulating dauer formation in the nematode Caenorhabditis elegans (15) and reproductive diapause in the fruit fly Drosophila melanogaster (16), thus suggesting a common mechanism regulating these diverse for...