Psoralen photoreacts with DNA to form interstrand cross-links, which can be repaired by both nonmutagenic nucleotide excision repair and recombinational repair pathways and by mutagenic pathways. In the yeast Saccharomyces cerevisiae, psoralen cross-links are processed by nucleotide excision repair to form double-strand breaks (DSBs). In yeast, DSBs are repaired primarily by homologous recombination, predicting that cross-link and DSB repair should induce similar recombination end points. We compared psoralen cross-link, psoralen monoadduct, and DSB repair using plasmid substrates with site-specific lesions and measured the patterns of gene conversion, crossing over, and targeted mutation. Psoralen cross-links induced both recombination and mutations, whereas DSBs induced only recombination, and monoadducts were neither recombinogenic nor mutagenic. Although the cross-link-and DSB-induced patterns of plasmid integration and gene conversion were similar in most respects, they showed opposite asymmetries in their unidirectional conversion tracts: primarily upstream from the damage site for cross-links but downstream for DSBs. Cross-links induced targeted mutations in 5% of the repaired plasmids; all were base substitutions, primarily T 3 C transitions. The major pathway of psoralen cross-link repair in yeast is error-free and involves the formation of DSB intermediates followed by homologous recombination. A fraction of the cross-links enter an error-prone pathway, resulting in mutations at the damage site.DNA interstrand cross-linkers are used widely in cancer chemotherapy because of their high cytotoxicity in replicating cells (1). These lesions are complex, and their repair involves several different DNA repair pathways. As with other forms of chemical damage, excision repair systems incise the damaged DNA strands; however, there is no undamaged strand to act as a template, and full repair requires the participation of additional pathways. Recombinational repair pathways are involved in restoring the intact duplex structure after excision (2-7). Additionally, cross-links efficiently induce mutations, implicating error-prone pathways in their repair (8,9).Psoralens are photoreactive DNA cross-linking agents that react with pyrimidine bases on opposite DNA strands in the presence of near ultraviolet light; 5Ј-TpA-3Ј sequences are preferred cross-linking sites (10, 11). There are two photoreactive positions in the psoralen molecule, the 4Ј,5Ј furan and the 3,4 pyrone double bonds, which can undergo sequential photoreactions to form cross-links. The major products of the first photoreaction step are furan-side monoadducts; these can undergo a second photoreaction at the pyrone side to generate interstrand cross-links. Psoralen plus ultraviolet A (PUVA) therapy is used to treat the skin disorders psoriasis and vitiligo; although effective, this treatment has been found to induce nonmelanoma skin cancers in a dose-dependent manner (12).Both nucleotide excision repair (NER) 1 and recombinational repair pathways partic...