To form and modify synaptic connections and store information, neurons continuously remodel their proteomes. The impressive length of dendrites and axons imposes unique logistical challenges to maintain synaptic proteins at locations remote from the transcription source (the nucleus). The discovery of thousands of mRNAs near synapses suggested that neurons overcome distance and gain autonomy by producing proteins locally 1 . It is not known, however if, how and when localized mRNAs are translated into protein. To investigate the translational landscape in neuronal subregions, we performed simultaneous RNA-seq and Ribo-seq from microdissected rodent brain slices to identify and quantify the transcriptome and translatome in cell bodies as well as dendrites and axons (neuropil). More than 4800 transcripts were translated in synaptic regions. Thousands of transcripts were differentially translated between somatic and synaptic regions, with scaffold and signaling molecules mostly arising from local sources. Furthermore, specific mRNA features were identified that regulate the efficiency of mRNA translation. The findings overturn the view that local translation is a minor source of synaptic protein 2 and indicate that on-site translational control is an important mechanism to control synaptic strength.
Main textAt neuronal synapses, more than 2500 proteins 1,3 (the "synaptic proteome") act as sensors and effectors to control neuronal excitability, synaptic strength and plasticity. The elaborate morphology and functional compartmentalization of the individual neuron imposes unique logistical challenges to maintain and modify the synaptic proteome at locations remote from the transcription source (i.e. the nucleus). To fulfill the local demand for new protein, neurons localize messenger RNAs (mRNAs) and ribosomes near synapses to produce proteins directly where they are needed 1 . Using highthroughput sequencing, several groups have reported the localization of thousands of transcripts to axons and dendrites (the "local transcriptome") 4-8 .In many cell types, however, it has been shown that the transcript levels do not always predict protein levels 9 , suggesting that mRNA translation is a highly regulated process. Since proteins, rather than mRNAs, drive cellular function, we must therefore determine directly which transcripts are translated into proteins in dendrites and/or axons in vivo (the "local translatome").