Root nodule symbiosis between legumes and rhizobia involves nitric oxide (NO) regulation by both the host plant and symbiotic rhizobia. However, the mechanisms by which the rhizobial control of NO affects root nodule symbiosis in
Lotus japonicus
are unknown. Therefore, we herein investigated the effects of enhanced NO removal by
Mesorhizobium loti
on symbiosis with
L. japonicus
. The
hmp
gene, which in
Sinorhizobium meliloti
encodes a flavohemoglobin involved in NO detoxification, was introduced into
M. loti
to generate a transconjugant with enhanced NO removal. The symbiotic phenotype of the transconjugant with
L. japonicus
was examined. The transconjugant showed delayed infection and higher nitrogenase activity in mature nodules than the wild type, whereas nodule senescence was normal. This result is in contrast to previous findings showing that enhanced NO removal in
L. japonicus
by class 1 phytoglobin affected nodule senescence. To evaluate differences in NO detoxification between
M. loti
and
L. japonicus
, NO localization in nodules was investigated. The enhanced expression of
class 1
phytoglobin
in
L. japonicus
reduced the amount of NO not only in infected cells, but also in vascular bundles, whereas that of
hmp
in
M. loti
reduced the amount of NO in infected cells only. This difference suggests that NO detoxification by
M. loti
exerts different effects in symbiosis than that by
L. japonicus
.