“…It should be noted that the conditions of fixing cardiac tissue can affect cardiomyocyte morphology and additional methods have been developed to determine accurately myocyte cross-sectional area as well as length (539). Masson's trichrome staining of sections is used to assess fibrosis in combination with cardiomyocyte morphology (542), and the collagen volume fraction may be quantified by picrosirius-red staining and polarized-light microscopy (568). Expression of T 3 target genes, including Hcn2, Kcne1, Kcnb1, Kcna1, Kcnq1, Thra, Thrb (534), Atp2a2, Myh6, Myh7 (62,238), and Nppa (238), is performed by RT-qPCR on mRNA extracted either from whole heart or from individual chambers or regions (see Section I.2 for technical considerations).…”