“…3). OpenMS provides implementations for over 30 file formats, including the current and upcoming open standards defined by the Proteomics Standards Initiative of the Human Proteome Organization (HUPO-PSI) such as mzML, TraML, mzIdentML, mzQuantML, mzTab and qcML [2,3,4,5,17,18] (see Supplementary Note 1). In addition, OpenMS includes standard algorithms related to biomolecular properties (such as mass calculation, isotopic composition, protein digestion etc.)…”