N-Acyl homoserine lactone (AHL) quorum-sensing signals are the vital elements of bacterial quorum-sensing systems, which regulate diverse biological functions, including virulence. The AHL-lactonase, a quorumquenching enzyme encoded by aiiA from Bacillus sp., inactivates AHLs by hydrolyzing the lactone bond to produce corresponding N-acyl homoserines. To characterize the enzyme, the recombinant AHL-lactonase and its four variants were purified. Kinetic and substrate specificity analysis showed that AHL-lactonase had no or little residue activity to non-acyl lactones and noncyclic esters, but displayed strong enzyme activity toward all tested AHLs, varying in length and nature of the substitution at the C3 position of the acyl chain. The data also indicate that the amide group and the ketone at the C1 position of the acyl chain of AHLs could be important structural features in enzyme-substrate interaction. Surprisingly, although carrying a 104 HX-HXDH 109 short sequence identical to the zinc-binding motif of several groups of metallohydrolytic enzymes, AHL-lactonase does not contain or require zinc or other metal ions for enzyme activity. Except for the amino acid residue His-104, which was shown previously to not be required for catalysis, kinetic study and conformational analysis using circular dichroism spectrometry showed that substitution of the other key residues in the motif (His-106, Asp-108, and His-109), as well as His-169 with serine, respectively, caused conformational changes and significant loss of enzyme activity. We conclude that AHL-lactonase is a highly specific enzyme and that the 106 HXDH 109 ϳH 169 of AHL-lactonase represents a novel catalytic motif, which does not rely on zinc or other metal ions for activity.Many host-associated bacteria produce, release, and respond to small signal molecules to monitor their own population density and control the expression of specific genes in response to change in population density. This type of gene regulation, which controls diverse biological functions including virulence and biofilm formation, is known as quorum-sensing (QS) 1 (1-4). In general, each individual bacterial cell produces a basal level of QS signals. The signals accumulate to a threshold concentration as the cells proliferate and interact with their cognate transcription factors to activate gene expression. Several groups of QS signals have been identified. Among them, N-acyl homoserine lactones (AHLs) comprise a family of QS signals identified in many Gram-negative bacteria, in particular, Proteobacteria. Different bacterial species may produce different AHLs, which vary in the length and substitution of the acyl chain but maintain the same homoserine lactone moiety (1, 3, 4). These structural variations could constitute the basis of signaling specificity of AHL molecules (5, 6).The AHL-dependent QS system has drawn considerable attention over the last 10 years, as it is involved in the regulation of diverse and important biological functions, in particular, the virulence gene expressi...