To probe the role of the Asp-99. . .His-48 pair in phospholipase A, (PLA2) catalysis, the X-ray structure and kinetic characterization of the mutant Asp-99 + Asn-99 (D99N) of bovine pancreatic PLAZ was undertaken. Crystals of D99N belong to the trigonal space group P3121 and were isomorphous to the wild type (WT) (Noel J P et al., 1991, Biochemistry 30:11801-11811). The 1.9-A X-ray structure of the mutant showed that the carbonyl group of Asn-99 side chain is hydrogen bonded to His-48 in the same way as that of Asp-99 in the WT, thus retaining the tautomeric form of His-48 and the function of the enzyme. The NH2 group of Asn-99 points away from His-48. In contrast, in the D102N mutant of the protease enzyme trypsin, the NH, group of Asn-102 is hydrogen bonded to His-57 resulting in the inactive tautomeric form and hence the loss of enzymatic activity. Although the geometry of the catalytic triad in the PLA2 mutant remains the same as in the WT, we were surprised that the conserved structural water, linking the catalytic site with the ammonium group of Ala-1 of the interfacial site, was ejected by the proximity of the NH, group of Asn-99. The NH, group now forms a direct hydrogen bond with the carbonyl group of Ala-I.Keywords: histidine tautomeric form; missing structural water; PLA2 D99N mutant; structure-function relationship; X-ray structure Phospholipase A2 (Fig. 1A) hydrolyzes the sn-2 ester bond of phospholipids. The studies on the mechanism of action of PLA2 have generated immense pharmacological interest. The mechanism involves binding of the enzyme to the lipid-water interface, productive binding of a single lipid molecule in the active site followed by hydrolysis (Scott et al., 1990). The interfacial binding site is essentially at the surface and includes the residues of the N-terminal helix-A, the calcium ion binding loop, and the loop connecting helix-D and the 0-sheet (Dijkstra et al., 1981; see Kinemage 1). The catalytic triad Asp-99, His-48, and the waReprint requests to: Muttaiya Sundaralingam or Ming-Daw Tsai, Department