Plant distribution data for the Czech Republic integrated in the Pladias database

Wild, Jan; Kaplan, Zdeněk; Danihelka, Jiří; Petřík, Petr; Chytrý, Milan; Novotný, P.; Rohn, Martin; Šulc, Václav; Bruna, J; Chobot, Karel; Ekr, Libor; Holubová, Dana; Knollová, Ilona; Kocián, Petr; Štech, Milan; Štěpánek, Jan; Zouhar, Václav

doi:10.23855/preslia.2019.001

Cited by 51 publications

(49 citation statements)

References 18 publications

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“…The present dataset provides the most comprehensive information on genomic parameters ever provided for a flora of a particular country. These data are now incorporated into the Database of the Czech Flora and Vegetation (Pladias; www.pladias.cz, Wild et al 2019) and will be updated when new measurements become available. This dataset will enable robust tests of the effect of individual genomic parameters on species anatomy, physiology, morphology and ecology (e.g.…”

Section: Perspectivesmentioning

confidence: 99%

“…Because of its important ecological consequences, information about genome size and/or ploidy level is included in modern biological floras and trait databases such as the Ecological Flora of the British Isles (Fitter & Peat 1994; http://www.ecoflora.co.uk), the Database on Biological and Ecological Traits of the Flora of Germany (BiolFlor; Klotz et al 2002, www.biolflor.de) and the Global Plant Trait Database (TRY; Kattge et al 2011, http://www.try-db.org). Information about genome size will also be included in the Database of the Czech Flora and Vegetation (Pladias; www.pladias.cz, Wild et al 2019). However, there is no genome size data for many widespread species, and the data reported in the literature are sometimes difficult to use for a variety of reasons (see below).…”

Section: Introductionmentioning

confidence: 99%

“…The goal was to prepare comprehensive and cross-comparable data on genome sizes, genomic GC contents and associated metrics (ploidy level and monoploid genome size) of Czech vascular plants. This work will (i) serve as the base for the genomic and karyological traits section of the Database of the Czech Flora and Vegetation (Pladias; www.pladias.cz, Wild et al 2019) and will (ii) enable the testing of hypotheses about the evolution and biological relevance of these parameters.…”

Section: Introductionmentioning

confidence: 99%

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Genome sizes and genomic guanine+cytosine (GC) contents of the Czech vascular flora with new estimates for 1700 species

Šmarda¹,

Knápek²,

Šilerová³

et al. 2019

Preslia

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Genome sizes and genomic guanine+cytosine (GC) contents of the Czech vascular flora with new estimates for 1700 species.-Preslia 91: 117-142. The content of DNA in the somatic, unreplicated cell nuclei (genome size) and DNA base composition (GC content) are the basic genomic parameters that can be measured by flow cytometry. Genome size, or ploidy level, can affect many plant properties and are therefore included as important features in modern biological floras and plant trait databases. However, genomic data are still largely measured mainly for taxonomic and biosystematic purposes, and despite the popularity of flow cytometry in the Czech Republic, this information is still missing for many of the vascular plants in the Czech flora. The biological significance of the GC content is less clear compared to the genome size, which, along with the greater difficulty in measuring it, results in the absence of such information for the vast majority of species. Here, we measure these two genomic parameters for 1908 samples of 1700 species in the Czech vascular flora. Here for the first time are reported the genome sizes of more than 1000 species and GC contents of more than 1500 species, which more than doubles the amount of information on the GC content of vascular plants. Together with the published data obtained in our laboratory using the same methods and flow cytometers, this information is now available for 1910 species that occur in the Czech Republic (~83% of this country's permanent flora, excluding apomicts). They are summarized in a table, accompanied by information about assumed chromosome number, ploidy level and an estimate of the monoploid genome size. We further provide a descriptive analysis of this dataset, list extreme values and comment on some cytogeographically interesting findings. This dataset is the largest and most comprehensive set of genomic data covering almost the entire flora of a country. It will serve as the basis of the karyological traits section of the Czech plant trait database Pladias (www.pladias.cz) and for testing of hypotheses about the evolution and biological relevance of these genomic parameters.

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Section: Perspectivesmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

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Genome sizes and genomic guanine+cytosine (GC) contents of the Czech vascular flora with new estimates for 1700 species

Šmarda¹,

Knápek²,

Šilerová³

et al. 2019

Preslia

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“…BRNL, BRNM, BRNU, CB, CBFS, CESK, CHEB, CHOM, FMM, GLM, GM, HOMP, HR, KHMS, LIM, LIT, MJ, MMI, MP, MZ, NJM, OH, OL, OLM, OMJ, OMP, OP, OSM, OVMB, PL, PR, PRA, PRC, ROZ, SOB, SOKO, SUM, VM, VYM, W and ZMT (acronyms follow Thiers 2019), were consulted as the main sources of taxonomically examined records. Most records for maps of common and easyto-identify taxa came from the Pladias database (Wild et al 2019), which has integrated data from five large national databases, several regional projects and unpublished field records from the maps' authors and regional contributors.…”

Section: Data Sourcesmentioning

confidence: 99%

“…Integration of all available records on the distribution of vascular plants in the Czech Republic into a single central database and initiation of mapping their distributions were two of the aims of the PLADIAS project funded by the Czech Science Foundation in 2014-2018. The plant occurrence module within a new Pladias database (www.pladias.cz) was launched in 2014 and now contains more than 13 million records of almost 5 thousand taxa of various ranks (Wild et al 2019). This database and an associated web-based mapping interface serve as a basic platform for mapping plant distributions within this country.…”

Section: Introductionmentioning

confidence: 99%

Distributions of vascular plants in the Czech Republic

Kaplan¹,

Danihelka²,

Chrtek³

et al. 2019

Preslia

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In search of a perfect trait set: A workflow presentation based on the conservation status assessment of Poland's dendroflora

Paź-Dyderska

Jagodziński

2023

Ecology and Evolution

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Recognized, well-covered traits are indispensable for large-scale analyses that provide syntheses explaining processes driving ecosystems worldwide (Chave et al., 2018;Madani et al., 2018;Niinemets et al., 2015). Yet, processes taking place at different levels of life organization cannot always be explained using the same functional traits (Lanta et al., 2011;Messier et al., 2010), because the factors driving ecological processes also differ across spatial scales (Pearson & Dawson, 2003). Therefore, we should move toward a more even coverage of the functional traits representing the diverse organs and biological functions of a plant (Cornwell et al., 2019;Kleyer & Minden, 2015). As a consequence, we could overlook and ignore other, perhaps highly explanative traits (Moravcová et al., 2015).Moreover, covering less-known traits with a higher number of measurements could reveal their hidden explanatory potential (Moravcová et al., 2015). Evenly covering different traits with measurements is the key to better-balanced models: As long as data are

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Plant distribution data for the Czech Republic integrated in the Pladias database

Cited by 51 publications

References 18 publications

Genome sizes and genomic guanine+cytosine (GC) contents of the Czech vascular flora with new estimates for 1700 species

Genome sizes and genomic guanine+cytosine (GC) contents of the Czech vascular flora with new estimates for 1700 species

Distributions of vascular plants in the Czech Republic

In search of a perfect trait set: A workflow presentation based on the conservation status assessment of Poland's dendroflora

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