2020
DOI: 10.1101/2020.11.10.377028
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Phenotypic and environmental predictors of reproductive success in painted turtles

Abstract: Sexual selection is often assumed to elicit sexually dimorphic traits. However, most work on this assumption in tetrapod vertebrates has focused on birds. In this field experiment, we assessed relationships between both sexually dimorphic (body size, claw length) and non-dimorphic traits (forelimb stripe color, baseline corticosterone concentrations) and reproductive success in adult painted turtles to explicate the roles of these phenotypes in mate choice and the evolution of sexual dimorphism. We also modifi… Show more

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(3 citation statements)
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“…In total, 164 painted turtle hatchlings representing seven sampling locations were sequenced for this project (Table 1; NCBI BioProject PRJNA789046, Judson et al., 2023), with an average of 3.77 million high‐quality reads per individual and 3.5 million reads mapped to the reference genome. Joint genotyping yielded 3.53 million SNP loci; individual depth filters and site filters resulted in a final dataset of 48,060 SNPs from 161 individuals with an average of 4.43% missing genotypes across individuals (Tables 1 and 2; Table S2).…”
Section: Resultsmentioning
confidence: 99%
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“…In total, 164 painted turtle hatchlings representing seven sampling locations were sequenced for this project (Table 1; NCBI BioProject PRJNA789046, Judson et al., 2023), with an average of 3.77 million high‐quality reads per individual and 3.5 million reads mapped to the reference genome. Joint genotyping yielded 3.53 million SNP loci; individual depth filters and site filters resulted in a final dataset of 48,060 SNPs from 161 individuals with an average of 4.43% missing genotypes across individuals (Tables 1 and 2; Table S2).…”
Section: Resultsmentioning
confidence: 99%
“…Then, we applied a minor allele frequency (MAF) filter such that singletons were excluded, and we retained only one SNP with the least missing data per 1.5 kb block to reduce linkage among markers, for a final dataset of 48,060 SNPs used for population genomic analyses. A summary of filtering steps and number of sites can be found in Table S2, and all custom scripts can be found in the repository (Judson et al., 2023).…”
Section: Methodsmentioning
confidence: 99%
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