2017
DOI: 10.1093/toxsci/kfx070
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Performance Assessment and Translation of Physiologically Based Pharmacokinetic Models From acslX to Berkeley Madonna, MATLAB, and R Language: Oxytetracycline and Gold Nanoparticles As Case Examples

Abstract: Many physiologically based pharmacokinetic (PBPK) models for environmental chemicals, drugs, and nanomaterials have been developed to aid risk and safety assessments using acslX. However, acslX has been rendered sunset since November 2015. Alternative modeling tools and tutorials are needed for future PBPK applications. This forum article aimed to: (1) demonstrate the performance of 4 PBPK modeling software packages (acslX, Berkeley Madonna, MATLAB, and R language) tested using 2 existing models (oxytetracycli… Show more

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Cited by 52 publications
(44 citation statements)
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“…The linear regression analysis between observations and predictions was further performed, and the linear regression correlation coefficient was calculated. In addition to these methods, the mean absolute percentage error (MAPE) was also calculated according to the fowling equation (Lin et al., ) to evaluate the validity of this multiroute PBPK model: MAPEfalse(%false)=1Ni=1N|Coi0.166667em0.166667emCpi|Cnormaloi×100%,where N stands for the number of observations, C oi and C pi represent the observed and predicted orbifloxacin concentration, respectively. The evaluation criteria of MAPE (Lin et al., ) are listed as follows: (i) acceptable prediction: MAPE < 50%; (ii) good prediction: 10% < MAPE < 20%; and (iii) excellent prediction: MAPE < 10%.…”
Section: Methodsmentioning
confidence: 99%
“…The linear regression analysis between observations and predictions was further performed, and the linear regression correlation coefficient was calculated. In addition to these methods, the mean absolute percentage error (MAPE) was also calculated according to the fowling equation (Lin et al., ) to evaluate the validity of this multiroute PBPK model: MAPEfalse(%false)=1Ni=1N|Coi0.166667em0.166667emCpi|Cnormaloi×100%,where N stands for the number of observations, C oi and C pi represent the observed and predicted orbifloxacin concentration, respectively. The evaluation criteria of MAPE (Lin et al., ) are listed as follows: (i) acceptable prediction: MAPE < 50%; (ii) good prediction: 10% < MAPE < 20%; and (iii) excellent prediction: MAPE < 10%.…”
Section: Methodsmentioning
confidence: 99%
“…According to World Health Organization guidelines (WHO, ), if the simulations matched the measured kinetic profiles well and were generally within a twofold range of the measured values, the model was considered reasonable and validated. The sensitivity and linear regression analyses were carried out using the method reported previously (Cheng, Riviere, Monteiro‐Riviere, & Lin, ; Elwell‐Cuddy, Li, KuKanich, & Lin, ; Lin et al, ; Zeng et al, ). The linear regression analysis was based on the mean value at each time point.…”
Section: Methodsmentioning
confidence: 99%
“…validated. The sensitivity and linear regression analyses were carried out using the method reported previously (Cheng, Riviere, Monteiro-Riviere, & Lin, 2018;Elwell-Cuddy, Li, KuKanich, & Lin, 2018;Lin et al, 2017;Zeng et al, 2017). The linear regression analysis was based on the mean value at each time point.…”
Section: Model Fittedmentioning
confidence: 99%
“…Mass balanced differential equations were used to illustrate the rate of change in each of the designed tissue compartments, and only methadone not bound to plasma proteins was considered to be available for use by the body. Berkeley Madonna™ (Version 8.3.23.0; University of California, Berkeley, CA, USA) was utilized to construct the model and conduct simulations, a software that has been used successfully in other PBPK models (Lin et al., ). The model code is contained within the Appendix and is also available on our center's website (http://iccm.k-state.edu/).…”
Section: Methodsmentioning
confidence: 99%