The
PE/PPE family of proteins which are in high abundance in pathogenic
species such as Mycobacterium tuberculosis and M. marinum, play the critical
role in generating antigenic variation and evasion of host immune
responses. However, little is known about their functional roles in
mycobacterial pathogenesis. Previously, we found that PPE38 is associated
with the virulence of mycobacteria, presumably by modulating the host
immune response. To clarify the link between PPE38 and host response,
we employed a subcellular, amino acid-coded mass tagging (AACT)/SILAC-based
quantitative proteomic approach to determine the proteome changes
during host response to M. marinum PPE38.
As a result, 291 or 290 proteins were found respectively to be up-
or down-regulated in the nucleus. Meanwhile, 576 upregulated and 272
downregulated proteins were respectively detected in the cytosol.
The data of quantitative proteomic changes and concurrent biological
validations revealed that M. marinum PPE38 could trigger extensive inflammatory responses in macrophages,
probably through interacting with toll-like receptor 2 (TLR2). We
also found that PPE38 may arrest MHC-1 processing and presentation
in infected macrophages. Using bioinformatics tools to analyze global
changes in the host proteome, we obtained a PPE38-respondor network involved in various transcriptional factors (TFs) and TF-associated
proteins. The results of our systems investigation now indicate that there is cross-talk involving a broad range of diverse biological pathways/processes that coordinate the host response to M. marinum PPE38.