Nucleotide sequence analysis of the glycoprotein gene of putative spring viraemia of carp virus and pike fry rhabdovirus isolates reveals four genogroups

Stone, David M.; Ahne, W.; Denham, K. L.; Dixon, Peter; Liu, C. T. Y.; Sheppard, Allan; Taylor, G. R.; Way, K.

doi:10.3354/dao053203

Cited by 117 publications

(142 citation statements)

References 16 publications

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“…Based on nucleotide sequence analysis of the G gene, SVCV isolates are further classified into four genogroups: Ia, Ib, Ic and Id (Warg et al, 2007;Zhang et al, 2009). Genogroup Ia contains isolates from Asia, the UK and the Americas; Ib and Ic contain isolates from Eastern Europe; and Id contains isolates from the UK and some other European countries (Stone et al, 2003;Hoffmann et al, 2005;Miller et al, 2007;Zhang et al, 2009;Padhi & Verghese, 2012). The genetic clustering of SVCV isolates is closely associated with geographical location, suggesting that the virus has evolved independently in different geographical regions (Stone et al, 2013).…”

Section: Genetic Diversity Amongst Svcv Strainsmentioning

confidence: 99%

Spring viraemia of carp virus: recent advances

Ashraf

Lin

et al. 2016

Journal of General Virology

176

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Section: Genetic Diversity Amongst Svcv Strainsmentioning

confidence: 99%

Spring viraemia of carp virus: recent advances

Ashraf

Lin

et al. 2016

Journal of General Virology

176

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“…The SVCV strain corresponds to the type I serogroup of spring viremia viruses (24). SVCV was propagated in monolayer cultures of Epithelioma papulosum cyprini cells at 30°C.…”

Section: Spring Viremia Of Carp Virus (Svcv) Infectionsmentioning

confidence: 99%

Identification of the Zebrafish IFN Receptor: Implications for the Origin of the Vertebrate IFN System

Levraud

Boudinot

Colin

et al. 2007

The Journal of Immunology

215

184

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The recent description of virus-induced fish IFNs has raised questions about the evolution of this complex antiviral system. Identification of the receptor of the zebrafish virus-induced IFN (zIFN) was sought to help resolve these questions. We set up an experimental system to study the zIFN system in the course of a viral infection of zebrafish embryos. In this setting, zIFN was induced by viral infection, and we identified zIFN-dependent induced transcripts. Embryos quickly died from the infection, but zIFN overexpression increased their survival. We took advantage of this experimental system to perform in vivo loss and gain of function analysis of candidate receptors of the class II helical receptor family and identified zCRFB1 and zCRFB5 as the two subunits of the zebrafish IFN receptor. Based on the organization of the zIFN gene and the protein structure of the identified receptor components, the virus-induced fish IFNs appear as orthologs of mammalian IFN-λ, specifying type III IFN as the ancestral antiviral system of vertebrates.

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“…Based on phylogenetic analysis of the nucleotide sequences of G proteins, SVCV isolates have been separated into four subgenogoups: genogroup Ia, originally from Asia; genogroups Ib and Ic, originally from Moldova, Ukraine and Russia; and genogroup Id, originally from the UK, with the exception of a few virus isolates from the former USSR [20]. The new sequence reported in this study indicates that our virus isolate belongs to the SVCV Ia cluster.…”

Section: Discussionmentioning

confidence: 99%

“…The G gene has been used in the study of genogroup analysis of SVCV isolates [16,20,23]. Based on phylogenetic analysis of the nucleotide sequences of G proteins, SVCV isolates have been separated into four subgenogoups: genogroup Ia, originally from Asia; genogroups Ib and Ic, originally from Moldova, Ukraine and Russia; and genogroup Id, originally from the UK, with the exception of a few virus isolates from the former USSR [20].…”

Section: Discussionmentioning

confidence: 99%

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Characterization of complete genome sequence of the spring viremia of carp virus isolated from common carp (Cyprinus carpio) in China

et al. 2007

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SummaryThe complete genome of spring viraemia of carp virus (SVCV) strain A-1 isolated from cultured common carp (Cyprinus carpio) in China was sequenced and characterized. Reverse transcriptionpolymerase chain reaction (RT-PCR) derived clones were constructed and the DNA was sequenced. It showed that the entire genome of SVCV A-1 consists of 11,100 nucleotide base pairs, the predicted size of the viral RNA of rhabdoviruses. However, the additional insertions in bp 4633-4676 and bp 4684-4724 of SVCV A-1 were different from the other two published SVCV complete genomes. Five open reading frames (ORFs) of SVCV A-1 were identified and further confirmed by RT-PCR and DNA sequencing of their respective RT-PCR products. The 5 structural proteins encoded by the viral RNA were ordered 3 0 -N-P-M-G-L-5 0 . This is the first report of a complete genome sequence of SVCV isolated from cultured carp in China. Phylogenetic analysis indicates that SVCV A-1 is closely related to the members of the genus Vesiculovirus, family Rhabdoviridae.

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Nucleotide sequence analysis of the glycoprotein gene of putative spring viraemia of carp virus and pike fry rhabdovirus isolates reveals four genogroups

Abstract: RT-PCR methods have been applied to the detection and sequencing of the glycoprotein gene of putative spring viraemia of carp viruses (SVCV) and pike fry rhabdoviruses (PFRV), including isolates from tench, grass carp, roach, bream and false harlequin, sheatfish and orfe.

Cited by 117 publications

References 16 publications

Spring viraemia of carp virus: recent advances

Spring viraemia of carp virus: recent advances

Identification of the Zebrafish IFN Receptor: Implications for the Origin of the Vertebrate IFN System

Characterization of complete genome sequence of the spring viremia of carp virus isolated from common carp (Cyprinus carpio) in China

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