Targeted protein degradation (TPD), represented by proteolysis-targeting
chimera (PROTAC), has emerged as a novel therapeutic modality in drug
discovery. However, the application of conventional PROTACs is limited
to protein targets containing cytosolic domains with ligandable sites.
Recently, nucleic-acid-based modalities, such as modified oligonucleotide
mimics and aptamers, opened new avenues to degrade protein targets
and greatly expanded the scope of TPD. Beyond constructing protein-degrading
chimeras, nucleic acid motifs can also serve as substrates for targeted
degradation. Particularly, the new type of chimeric RNA degrader termed
ribonuclease-targeting chimera (RIBOTAC) has shown promising features
in drug discovery. Here, we provide an overview of the newly emerging
TPD strategies based on nucleic acids as well as new strategies for
targeted degradation of nucleic acid (RNA) targets. The design strategies,
case studies, potential applications, and challenges are focused on.