The development of assays for quantitative analysis of the relative transcript levels of ABC transporter genes by real-time reverse transcription-PCR (RT-PCR) might provide important information about multidrug resistance in filamentous fungi. Here, we evaluate the potential of real-time RT-PCR to quantify the relative transcript levels of ABC transporter Atr genes from Aspergillus nidulans. The AtrA to AtrD genes showed different and higher levels in the presence of structurally unrelated drugs, such as camptothecin, imazalil, itraconazole, hygromycin, and 4-nitroquinoline oxide. We also verified the relative transcript levels of the Atr genes in the A. nidulans imazalil-resistant mutants. These genes displayed a very complex pattern in different ima genetic backgrounds. The imaB mutant has higher basal transcript levels of AtrB and -D than those of the wild-type strain. The levels of these two genes are comparable when the imaB mutant is grown in the presence and absence of imazalil. The imaC, -D, and -H mutants have higher basal levels of AtrA than that of the wild type. The same behavior is observed for the relative transcript levels of AtrB in the imaG mutant background.The frequency of life-threatening fungal infections is rising worldwide. The need for effective antifungal therapies has been more acute since the emergence of AIDS and AIDSrelated complex, which are often associated with opportunistic fungal infections (15). The failure of drugs to treat fungal infections combined with improvements in performance and standardization of antifungal susceptibility testing have drawn attention to the problem of antifungal drug resistance. It is now clear that antifungal agents can create clinical and epidemiological situations that are analogous to those found with antibiotic-resistant bacteria (1,7,8,9,18,20,24,25). There are several known genetic determinants associated with multidrug resistance in fungi (for reviews, see references 3, 5, 11, 21, 23, and 29). Typical gene products responsible for multiple drug resistance in these organisms are ABC (ATP-binding cassette) transport proteins that are responsible for the efflux of toxic compounds (for a review, see reference 16).Fungi are becoming very important human pathogens, and there are few drugs that can inhibit fungal growth. The epidemiological combination of these two factors predicts that very soon fungi will acquire new genetic determinants that will provide multidrug resistance. Actually, there are already several reports showing the emergence of multidrug resistance in fungal pathogens (for a review, see reference 29). The evidence so far points to ABC transporter-encoding genes playing an important role in these phenomena. The development of assays for quantitative analysis of the relative transcript levels of ABC transporter genes by real-time reverse transcription-PCR (RT-PCR) might provide important information about multidrug resistance in filamentous fungi. Quantitative nucleic acid sequence analysis has had an important role in many fields o...