The transmembrane orientation of the polypeptide chains present in preparations of adult and neonatal mouse N-CAM was studied using, as a model system, liposome-inserted purified N-CAM preparations. N-CAM purified from adult or neonatal mouse brain was 1251-labeled and reconstituted into artificial lipid vesicles. After trypsin digestion, the peptides thar remained associated with the liposomes were isolated by floatation of the vesicles on sucrose gradients. In control experiments the liposomes were lysed before trypsin treatment. Large, overlapping peptides were obtained after this treatment, several of which were protected by the liposome membrane. Sialic-acidbearing peptides were revealed by their sensitivity to neuraminidase. To distinguish between peptides corresponding to intracellular or extracellular domains use was made of the P61 and H28.123 monoclonal antibodies, which recognize determinants located on the cytoplasmic and the extracellular part of the molecules respectively.There was no indication that the N-CAM chains were inserted in an inside-out configuration. Peptides protected from trypsin attack by the liposomes and recognized only by P61 had M , values of 92000,42000 and 35000. The H28.123 determinant could be mapped to a 32000-M, peptide located close to the membrane at the vesicle's exterior. The bulk of the sialic acid seemed to be carried by a rather short sequence distal to the H28.123-reactive peptide but at some distance from the N terminus. Fragments of very similar M , were generated from young and adult material.However, a 45000-M, peptide from neonatal N-CAM appeared to migrate in the high-Mr region of sodium dodecyl sulfatejpolyacrylamide &ells in its fully sialylated form.It is concluded that (a) identical polypeptide chains are present in young and adult preparation, (b) the 180000-Mr, 140000-Mr and 120000-Mr chains differ by the length of their cytoplasmic extensions and (c) the largest cytoplasmic sequences have a Mr close to 90000. A tentative linear model of the transmembrane topography of the N-CAM polypeptides is presented.The neural cell adhesion molecules, called N-CAMS, are among the best-characterized cell adhesion proteins [I, 21. Unsolved questions concerning their structure are their mode of interaction with the cell membrane and the exact relationship between the two or three structurally similar polypeptides isolated from chick [3] or rodent [4 -61 brain. Our approach to these problems has been to reconstitute purified mouse N-CAM into artificial lipid vesicles and to analyze the peptides generated by trypsin digestion of these vesicles. A number of previous studies have addressed the question of how intrinsic membrane proteins insert in liposomes (see for instance [7 -9]), and it is generally agreed that the proteins interact with the vesicle bilayer in a way closely resembling their arrangement in the native membrane. However, few studies on the transmembrane topography of proteins have Abbreviations. SDS, sodium dodecyl sulfate; Tris/saline, 50 mM Tris pH 7.4,...