“…The interactions between system components are critically dependent on network architecture, or topology, which brings about emergent properties and behaviors so that phenotypic traits arise from the collective action of genes (and conversely, genetic diversity results in a variety of phenotypes). Collective phenomena include steady-state multiplicity (e.g., bistability), hysteresis, oscillations, whose details are outside the scope of this paper [for reviews, see (Goldbeter, 2018;Goldbeter and Yan, 2022)]. As for the relevance in drug discovery, the deterministic nature of ODE-based model simulation has the critical advantage of allowing the study of "emergence" in terms of quantitatively monitoring and analyzing the phenotypic response of the whole biological system to pharmacological, genetic, environmental, or pathophysiological perturbations.…”