“…Oligo-Analysis/Dyad-Analysis (van Helden et al, 2000) and YMF (Sinha and Tompa, 2003)], some enumerate possible patterns from given sequences [e.g. MOPAC (Ganesh et al, 2003)], while others use tree structures [e.g. Weeder (Pevesi et al, 2004)] or other mathematical approaches [e.g.…”