Mitochondrial genome characteristics of two Sphingidae insects (Psilogramma increta and Macroglossum stellatarum) and implications for their phylogeny

Li, Jun; Zhang, Yaoyao; Hu, Kunjie; Zhao, Yaqi; Lin, Ruirui; Li, Yán; Huang, Zan; Xu, Zaifu; Geng, Xuexia; Ding, Jian

doi:10.1016/j.ijbiomac.2018.02.159

Cited by 21 publications

(15 citation statements)

References 27 publications

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“…Whole genome sequencing was performed on an Illumina HiSeq 2500 platform (Illumina, San Diego, CA, USA). Quality control and de novo assembly of the S. mutilans mitogenome were conducted based on previously described methods (Li et al 2018b). Briefly, raw reads were first filtered to generate clean data.…”

Section: Sequencing Assembly and Annotation Of Mitochondrial Genomesmentioning

confidence: 99%

The complete mitochondrial genome sequence of Scolopendra mutilans L. Koch, 1878 (Scolopendromorpha, Scolopendridae), with a comparative analysis of other centipede genomes

Hu¹,

Wang²,

Huang³

et al. 2020

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Scolopendra mutilans L. Koch, 1878 is an important Chinese animal with thousands of years of medicinal history. However, the genomic information of this species is limited, which hinders its further application. Here, the complete mitochondrial genome (mitogenome) of S. mutilans was sequenced and assembled by next-generation sequencing. The genome is 15,011 bp in length, consisting of 13 protein-coding genes (PCGs), 14 tRNA genes, and two rRNA genes. Most PCGs start with the ATN initiation codon, and all PCGs have the conventional stop codons TAA and TAG. The S. mutilans mitogenome revealed nine simple sequence repeats (SSRs), and an obviously lower GC content compared with other seven centipede mitogenomes previously sequenced. After analysis of homologous regions between the eight centipede mitogenomes, the S. mutilans mitogenome further showed clear genomic rearrangements. The phylogenetic analysis of eight centipedes using 13 conserved PCG genes was finally performed. The phylogenetic reconstructions showed Scutigeromorpha as a separate group, and Scolopendromorpha in a sister-group relationship with Lithobiomorpha and Geophilomorpha. Collectively, the S. mutilans mitogenome provided new genomic resources, which will improve its medicinal research and applications in the future.

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Section: Sequencing Assembly and Annotation Of Mitochondrial Genomesmentioning

confidence: 99%

The complete mitochondrial genome sequence of Scolopendra mutilans L. Koch, 1878 (Scolopendromorpha, Scolopendridae), with a comparative analysis of other centipede genomes

Hu¹,

Wang²,

Huang³

et al. 2020

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“…Some noctuid species lack GC rich synonymous codons, with G or C at the third codon position, such as GCG, CGC, GGC and CCG (e.g., these are not present in A. ipsilon) (Wu, Cui & Wei, 2015). The rarity or complete absence of GC-rich codons occur in various insect species (Sun et al, 2017;Li et al, 2018).…”

Section: Protein-coding Genes and Codon Usagementioning

confidence: 99%

The complete mitochondrial genome of Dysgonia stuposa (Lepidoptera: Erebidae) and phylogenetic relationships within Noctuoidea

Sun

Zhu

Chen

et al. 2020

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To determine the Dysgonia stuposa mitochondrial genome (mitogenome) structure and to clarify its phylogenetic position, the entire mitogenome of D. stuposa was sequenced and annotated. The D. stuposa mitogenome is 15,721 bp in size and contains 37 genes (protein-coding genes, transfer RNA genes, ribosomal RNA genes) usually found in lepidopteran mitogenomes. The newly sequenced mitogenome contained some common features reported in other Erebidae species, e.g., an A+T biased nucleotide composition and a non-canonical start codon for cox1 (CGA). Like other insect mitogenomes, the D. stuposa mitogenome had a conserved sequence ‘ATACTAA’ in an intergenic spacer between trnS2 and nad1, and a motif ‘ATAGA’ followed by a 20 bp poly-T stretch in the A+T rich region. Phylogenetic analyses supported D. stuposa as part of the Erebidae family and reconfirmed the monophyly of the subfamilies Arctiinae, Catocalinae and Lymantriinae within Erebidae.

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“…The A þ T-rich region of the I. admirabilis mitogenome is located between rrnS and trnM genes, and it has a Lepidoptera-specific poly-T stretch. However, it is obviously longer than the other species of Lepidoptera (Kim et al 2013;Li et al 2018Li et al , 2019, and the motif sequence is ACATA instead of ATAGA in other geometrid moths.…”

mentioning

confidence: 92%

“…The moths of I. admirabilis were collected in Huangshan Mountains, China (30 04 0 44.59 00 N, 118 08 0 56.59 00 E). The methods of DNA extraction, amplification, and sequencing were same as that described in Li et al (2018Li et al ( , 2019. The specimen (accession number is 20170525004) and the template DNA (accession number is 20170525004DNA) were respectively deposited in the Specimens Room and in the Human and Animal Genetics Laboratory, School of Life Sciences, Huaibei Normal University, China.…”

mentioning

confidence: 99%

Complete mitochondrial genome of Iotaphora admirabilis (Lepidoptera: Geometridae)

Ding

Yang

2020

Mitochondrial DNA Part B

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Iotaphora admirabilis Oberth€ ur, 1883 belongs to the family Geometridae of Lepidoptera, distributed in many Asia countries such as India, China, Russia, etc. In this study, we described the general features of the complete mitochondrial genome (mitogenome) sequences of this species. The mitogenome is 16,140 bp long and consists of 37 genes (13 protein-coding genes, 2 rRNA genes, and 22 tRNA genes) and one non-coding A þ T-rich region, with the typical arrangement found in Lepidoptera. There are 14 genes on the N-strand with the remaining genes on the J-strand. All protein-coding genes start with ATN codons and stop with TAA codons. Phylogenetic analysis, based on the complete mitogenome sequences of 13 species belonging to 3 subfamilies (Larentiinae, Geometrinae, and Ennominae) of Geometridae, shows the sister relationship between Geometrinae and Ennominae, with the placement of Larentiinae as the basal lineage of the two subfamilies. ARTICLE HISTORY

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Mitochondrial genome characteristics of two Sphingidae insects (Psilogramma increta and Macroglossum stellatarum) and implications for their phylogeny

Cited by 21 publications

References 27 publications

The complete mitochondrial genome sequence of Scolopendra mutilans L. Koch, 1878 (Scolopendromorpha, Scolopendridae), with a comparative analysis of other centipede genomes

The complete mitochondrial genome sequence of Scolopendra mutilans L. Koch, 1878 (Scolopendromorpha, Scolopendridae), with a comparative analysis of other centipede genomes

The complete mitochondrial genome of Dysgonia stuposa (Lepidoptera: Erebidae) and phylogenetic relationships within Noctuoidea

Complete mitochondrial genome of Iotaphora admirabilis (Lepidoptera: Geometridae)

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