This study addressed the advanced micro-morphological characterization of 3D surfaces of thin films based on composites of an organic matrix of poly-methyl-methacrylate and inorganic titanium-dioxide nanocrystals. The films were prepared by spin-coating of a series of solutions with increasing loading concentration of the nanocrystals, from 5 up to 40% by weight. The film surfaces were investigated by atomic force microscopy, and the resulting images were analyzed in detail to obtain a full quantitative description of their surface micromorphology. The fractal analysis of the surface roughness was used to extract the characteristics of amplitude, spatial distribution, and pattern. A fractal geometry was indeed observed, and the corresponding fractal dimension D was determined for all the samples. In view of the possible use of these thin films as functional coatings, the calculated quantities are discussed with respect to the foreseen durability of these surfaces during operation under wear.