Background: LY6K is a candidate cancer biomarker that promotes invasion and metastasis. Results: AP-1 activation is required for the LY6K expression and interfered by SNP242 or methylation. Conclusion: AP-1 promotes LY6K expression that regulates cell mobility, whereas SNP242 or methylation reduces the metastasis. Significance: Understanding the regulatory mechanisms of the LY6K is important for investigating breast cancer risk.