The HIV-1 envelope glycoprotein gp41 undergoes a sequence of extensive conformational changes while participating in the fusion of the virus with the host cell. Since the discovery of its postfusion conformation, the structure and function of the protease-resistant six-helix bundle (6-HB) have been the subject of extensive investigation. In this work, we describe additional determinants (S528-Q540 and W666-N677) in the fusion peptide proximal region (FP-PR) and the membrane proximal external region (MPER) that stabilize the six-helix bundle and are involved in the interaction of T-20 (FUZEON, an anti-HIV-1 fusion inhibitor drug) with the gp41 FP-PR. Circular dichroism and sedimentation equilibrium measurements indicate that the 1:1 mixture of N′ and C′ peptides comprising residues A541-T569 and I635-K665 from the gp41 first and second helical repeats, HR1 and HR2, respectively, fail to form a stable six-helix bundle. Triglutamic acid and triarginine tags were added to these N′ and C′ peptides, respectively, at the termini distant from the FP-PR and the MPER to alter their pI and increase their solubility at pH 3.5. The tagged HR1 and HR2 peptides were elongated by addition of residues S528-Q540 from the FP-PR and residues W666-N677 from the MPER, respectively. A 1:1 complex of the elongated peptides formed a stable six-helix bundle which melted at 60 °C. These results underscore the importance of a detailed high-resolution characterization of MPER interactions, the results of which may improve our understanding of the structure-function relationship of gp41 and its role in HIV-1 fusion.The human immunodeficiency virus type 1 (HIV-1) 1 envelope protein is initially produced as a precursor glycoprotein gp160, which is proteolytically cleaved into two subunits. The resulting surface subunit (gp120) and transmembrane subunit (gp41) remain noncovalently associated and oligomerize as trimers on the surface of the virion. The transmembrane subunit gp41 mediates fusion between HIV-1 and its target cells (1). After the penetration of the gp41 † This study was supported by NIH Grants GM53329 (J.A.) and GM22086 (F. * To whom correspondence should be addressed. E-mail: Jacob.Anglister@weizmann.ac.il. . ‡ Weizmann Institute of Science. § College of Staten Island of the City University of New York.1 Abbreviations: CD, circular dichroism; DIEA, diisopropylethylamine; EDTA, ethylenediaminetetraacetic acid; EEE, Glu-Glu-Glu tag; FP-PR, fusion peptide proximal region; gp41, HIV-1 glycoprotein 41; gp120, HIV-1 glycoprotein 120; HIV-1, human immunodeficiency virus type 1; HPLC, high-pressure liquid chromatography; HR1, HIV-1 gp41 N′ heptad repeat 1; HR2, HIV-1 gp41 C′ heptad repeat 2; IPTG, isopropyl β-D-1-thiogalactopyranoside; K d , dissociation constant; MPER, membrane proximal external region; MALDI, matrixassisted laser desorption ionization; NMR, nuclear magnetic resonance; RRR, Arg-Arg-Arg tag; SIV, simian immunodeficiency virus; T-20, HIV fusion inhibitor corresponding to gp41 residues Y638-F673; TFA, trifluo-roacet...