2020
DOI: 10.1021/acs.jpca.0c03926
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Machine Learning for Accurate Force Calculations in Molecular Dynamics Simulations

Abstract: The computationally expensive nature of ab initio molecular dynamics simulations severely limits its ability to simulate large system sizes and long time scales, both of which are necessary to imitate experimental conditions. In this work, we explore an approach to make use of the data obtained using the quantum mechanical density functional theory (DFT) on small systems and use deep learning to subsequently simulate large systems by taking liquid argon as a test case. A suitable vector representation was chos… Show more

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Cited by 54 publications
(39 citation statements)
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References 99 publications
(179 reference statements)
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“…and an accurate high level method (DFT, post-HF etc.). 168,[239][240][241][242] Just as important as the simulation itself is the nal step shown in Fig. 10, i.e.…”
Section: Machine Learning For Molecular Dynamics Simulationsmentioning
confidence: 99%
“…and an accurate high level method (DFT, post-HF etc.). 168,[239][240][241][242] Just as important as the simulation itself is the nal step shown in Fig. 10, i.e.…”
Section: Machine Learning For Molecular Dynamics Simulationsmentioning
confidence: 99%
“…Recently new methods that use modern deep/reinforcement learning have been proposed to tackle problems in molecular sciences such as physical property prediction, 8,9 drug design tasks, 10 protein structure prediction, 11–13 molecular simulations, 14–16 and de novo molecule generation. 17 Most of the deep learning models that tackle the problem of molecular generation are based on variational autoencoders, 18–21 Generative Adversarial Networks 22–24 and Reinforcement Learning.…”
Section: Introductionmentioning
confidence: 99%
“…In recent years, with the advancement in computer technology and increase in practicable data, the use of data-intensive techniques like machine learning and deep learning has burgeoned in numerous domains. [27][28][29][30][31] Consequently, this has also influenced the field of bio and cheminformatics greatly by providing solutions to a multitude of problems including binding site prediction. [32][33][34][35][36] The improvement in performance with an increase in accuracy of binding site detection forms substantial evidence to the increasing adoption of ML methods for this problem.…”
Section: Introductionmentioning
confidence: 99%