Perturbations in mitochondrial function and homeostasis are pervasive in lysosomal storage diseases, but the underlying mechanisms remain unknown. Here, we report a transcriptional program that represses mitochondrial biogenesis and function in lysosomal storage diseases Niemann-Pick type C (NPC) and acid sphingomyelinase deficiency (ASM), in patient cells and mouse tissues. This mechanism is mediated by the transcription factors KLF2 and ETV1, which are both induced in NPC and ASM patient cells. Mitochondrial biogenesis and function defects in these cells are rescued by the silencing of KLF2 or ETV1. Increased ETV1 expression is regulated by KLF2, while the increase of KLF2 protein levels in NPC and ASM stems from impaired signaling downstream sphingosine-1-phosphate receptor 1 (S1PR1), which normally represses KLF2. In patient cells, S1PR1 is undetectable at the plasma membrane and thus unable to repress KLF2. This manuscript provides a mechanistic pathway for the prevalent mitochondrial defects in lysosomal storage diseases.. CC-BY 4.0 International license It is made available under a (which was not peer-reviewed) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity.The copyright holder for this preprint . http://dx.doi.org/10.1101/381376 doi: bioRxiv preprint first posted online Jul. 31, 2018; 3
INTRODUCTIONLysosomal storage diseases are a group of severe diseases caused by mutations in genes encoding for lysosomal proteins, and are referred to as storage diseases because one common phenotype is the accumulation of undigested substrates in the lysosomes, with the consequent enlargement and loss of function of the organelle (Parenti et al., 2015). The lysosomes have far-reaching roles beyond the "recycling bin" paradigm, and are key players in nutrient sensing and metabolic regulation (Ballabio, 2016;Lim and Zoncu, 2016;Settembre et al., 2013). Furthermore, lysosomes are essential for the process of macroautophagy, and thus for the selective autophagy of mitochondria, the main mechanism to degrade dysfunctional mitochondria (Pickles et al., 2018). Mitochondrial perturbations have been widely reported in several lysosomal storage diseases (Platt et al., 2012;Plotegher and Duchen, 2017), including neuronal ceroid lipofuscinosis, Gaucher and Niemann-Pick diseases (Jolly et al., 2002;Lim et al., 2015;Osellame et al., 2013;Torres et al., 2017;Wos et al., 2016). Nevertheless, it remains unclear why mitochondrial dysfunction is so prevalent in lysosomal storage diseases.In this study, we focus on two lysosomal storage diseases, Niemann-Pick type C (NPC) and acid sphingomyelinase deficiency. NPC is caused by mutations in the gene NPC1 or, less commonly, NPC2 (Patterson and Walkley, 2017;Schuchman and Wasserstein, 2016). NPC1and NPC2 encode proteins involved in sphingomyelin and cholesterol efflux from the lysosome (Platt, 2014). Acid sphingomyelinase deficiency, also known as Niemann-Pick A/B, is caused by mutations in the gene SMPD1 encoding acid sphingomyelinase ...