Lactobacillus helveticus is a homofermentative thermophilic lactic acid bacterium that is used in the manufacture of Swiss type and long-ripened Italian cheeses, such as Emmental, Grana, and Provolone cheeses. Substantial differences in several technologically important characteristics are found among L. helveticus strains isolated from natural dairy starter cultures. In the present study we investigated the genotypic diversity of 74 strains isolated from different dairy cultures used for manufacturing Grana and Provolone cheeses and six collection strains. A restriction fragment length polymorphism analysis of both total genomic DNA and the 16S rRNA gene (ribotyping) was used as genotypic fingerprinting. A multivariate statistical analysis of the data enabled us to identify significant genotypic heterogeneity in L. helveticus. We found that genotypic fingerprinting could be used to distinguish strains; in particular, it was possible to associate the presence of specific strain genotypes with dairy ecosystem sources (e.g., Grana or Provolone cheese). Our data contribute to the description of microbial heterogeneity in L. helveticus and provide a more solid basis for understanding the functional and ecological significance of the presence of different L. helveticus biotypes in natural dairy starter cultures.Lactobacillus helveticus is a homofermentative thermophilic lactic acid bacterium (LAB) that is used in the manufacture of Swiss type and long-ripened Italian cheeses, such as Emmental, Grana, and Provolone cheeses. In particular, L. helveticus is the most prevalent species recovered from natural lactic starter cultures used to produce typical Italian cheeses. Such cultures represent complex microbial associations of LAB that are characterized by the presence of various species and subspecies, such as L. helveticus, Lactobacillus delbrueckii subsp. bulgaricus, Lactobacillus delbrueckii subsp. lactis, and Lactobacillus fermentum, and many biotypes (13, 27) of these species. Substantial differences in several technologically important characteristics have been found among L. helveticus strains isolated from natural dairy starter cultures (1,2,8,9,11,16,18,19,21,28,31).Because of the widespread use of L. helveticus in cheese technology, information concerning genotypic heterogeneity in this species is accumulating rapidly (6,7,14,17). A variety of genotypic and phenotypic methods have been used to show that the dominant L. helveticus communities in various dairy starters are composed of different biotypes, which sometimes may be associated with the source of isolation (2,6,9,12,14,20,22).In a previous study, 74 L. helveticus strains that were isolated from Grana and Provolone cheese natural whey starters were distinguished according to their origins by using both cell wall protein profiles and chemometric evaluation of some phenotypic parameters (10). The cell wall protein patterns allowed the researchers to distinguish L. helveticus strains according to their sources of isolation. Good discrimination between the...