The cardiac cycle starts when an action potential is produced by pacemaking cells in the sino-atrial node. This cycle is repeated approximately 100,000 times in humans and 1 million times in mice per day, imposing a monumental metabolic demand on the heart, requiring efficient blood supply via the coronary vasculature to maintain cardiac function. Although the ventricular coronary circulation has been extensively studied, the relationship between vascularization and cellular pacemaking modalities in the sino-atrial node is poorly understood. Here, we tested the hypothesis that the organization of the sino-atrial node micro-vasculature varies regionally, reflecting local myocyte firing properties. We show that vessel densities are higher in the superior versus inferior sino-atrial node. Accordingly, sino-atrial node myocytes are closer to vessels in the superior versus inferior regions. Superior and inferior sino-atrial node myocytes produce stochastic subthreshold voltage fluctuations and action potentials. However, the intrinsic action potential firing rate of sino-atrial node myocytes is higher in the superior versus inferior node. Our data support a model in which the micro-vascular densities vary regionally within the sino-atrial node to match the electrical and Ca2+ dynamics of nearby myocytes, effectively determining the dominant pacemaking site within the node. In this model, the high vascular density in the superior sino-atrial node places myocytes with metabolically demanding, high frequency action potentials near vessels. The lower vascularization and electrical activity of inferior sino-atrial node myocytes could limit these cells to function to support sino-atrial node periodicity with sporadic voltage fluctuations via a stochastic resonance mechanism.