Novel localised surface plasmon resonance-based sensors exploitable as diagnostic devices through surface enhanced Raman scattering (SERS) represent a powerful solution for the analysis of liquid samples. In this work, we developed a rapid, versatile, low-cost and time-saving strategy combining advanced (3D-printing) and traditional manufacturing (replica molding) processes to prototype polymeric microfluidic devices, integrating all the components into a single portable platform. Microfluidics provide multiplexed capability, adequate miniaturization and robustness, handling simplicity, reliability, as well as low sample and reagents consumption, while the use of polydimethylsiloxane as supporting substrate drastically reduces the final cost. To introduce SERS capability, plasmonic features were incorporated functionalizing substrates with gold nanoparticles (NPs), engineered in terms of shape, size and surface chemistry to play with plasmonic properties as well as to guarantee reproducibility to the NPs immobilization step and consequently to the SERS effect for signal enhancing. To assess the feasibility of the measurements for molecules optical targeting, SERS-microfluidic systems were synergically coupled with a portable fiber-based set-up and Raman spectra of rhodamine 6 G at different concentrations were acquired. To further demonstrate the potentiality of developed SERS-based substrates as point-of-care devices, Raman analysis were successfully implemented on aqueous solutions of amyloid-β 1-42 (Aβ), considered the main biomarkers for Alzheimer's disease.© 2020 The Author(s). Published by IOP Publishing Ltd J. Phys. Photonics 2 (2020) 024008 C Dallari et al enhance the Raman signal of several order of magnitude (typically 10 6 -10 7 ) and to probe low concentration analytes localized onto or near the surface of metallic nanostructures [6,7]. The main points to be addressed when fabricating SERS-based surfaces are represented by the morphology and design of resonant metallic nanostructures and their relative distance from the target analytes. For analytical applications as well as for biosensors fabrication, the preparation of these structures has to be (i) straightforward, (ii) reproducible and (iii) cost effective to consequently (iv) guarantee a robust SERS signal [8]. To this aim, microfluidic platforms are expected to provide reproducibility of SERS analysis of liquid samples because measurements could be finely controlled on a large scale, when prone to human errors, as well as exploited when samples volumes are reduced to micron or sub-micron scale [9]. Besides this, microfluidic chips as lab-on-chip devices (LoC) can reduce the assay cost in terms of consumption of reagents, sample volumes and time. Moreover, the real possibility to perform analysis in parallel speeds up the operations while allowing the identification of multiple target analytes, avoiding cross-contamination [10,11]. In many ways, LoCs fulfil the requirements for point-of-care (POC) diagnostic device [12]. The promising future pers...