2020 DOI: 10.20944/preprints202009.0584.v1 View full text Preprint
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Aly Kodio, Estelle Menu, Safiatou Doumbo, Drissa Coulibaly, Abdoulaye Kassoum Koné, Salimata Konaté, Mamadou Lamine Tall, Ogobara K. Doumbo, Didier Raoult, Mahamadou Aly Thera, Stéphane Ranque

Abstract: Eukaryotic enteric pathogens (EEP) are a public health issue in tropical areas. Yet, their interactions with the gut mycobiota remain poorly understood. We conducted a cross-sectional study in Malian children to analyze the impact of EEP on the gut fungal community. EEP were assessed by qPCR and the gut mycobiota was characterized by ITS1-2 metabarcoding in stool samples collected from 296 children. The 100 controls, in whom no EEP was detected, were compared to: a) 196 children with ≥1 EEP; b) 91 with …

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