Unlike mammals, bony fish have two type II interferons, IFN␥ and IFN␥rel, whose pro-inflammatory functions have not been fully characterized. To elucidate the distinct roles of these type II interferons of bony fish, we examined the effects of recombinant goldfish (rg) IFN␥ and IFN␥rel on the macrophage antimicrobial responses, immune gene expression, and their signaling pathways. Our findings indicate that rgIFN␥ and rgIFN␥rel possess unique capacities to mediate each of the above processes. Q-PCR analysis revealed similar expression of both cytokines in tissues and immune cell populations of the goldfish, although IFN␥ mRNA levels were generally higher in most tissues and cell types. Whereas rgIFN␥ had long-lasting effects on the priming of goldfish monocyte ROI production, the rgIFN␥rel had relatively short-lived ROI priming potential and eventually down-regulated the priming of ROI production induced by rgIFN␥ or rgTNF␣2. Whereas rgIFN␥ induced relatively modest phagocytic and nitric oxide responses of goldfish macrophages, rgIFN␥rel induced significantly higher phagocytosis, iNOSA and iNOSB gene expression and nitric oxide production compared with rgIFN␥. The rgIFN␥ and rgIFN␥rel induced different gene expression profiles in goldfish monocytes. These differences included significantly higher induction of TNF␣2, CXCL8, ceruloplasmin, and interferon regulatory factor (IRFs) expression after activation of monocytes with rgIFN␥rel. The rgIFN␥rel was more abundant in whole cell lysates compared with rgIFN␥. Both cytokines induced the phosphorylation of Stat1, while the nuclear localization of Stat1 was only observed following treatment of monocytes with rgIFN␥. Our findings suggest the presence of functional segregation of the induction of macrophage antimicrobial functions by type II interferons of bony fish.