Zfp206(recently renamed Zscan10) encodes a zinc finger transcription factor specifically expressed in human and mouse embryonic stem cells (ESC). It has been shown that Zfp206 is required to maintain ESC in an undifferentiated, pluripotent state. Presented here are data showing that Zfp206 works together with two other transcription factors, Oct4 and Sox2, which are also essential regulators of ESC pluripotency. We show that Zfp206 binds to the Oct4 promoter and directly regulates Oct4 expression. Genome-wide mapping of Zfp206-binding sites in ESC identifies more than 3000 target genes, many of which encode transcription factors that are also targeted for regulation by Oct4 and Sox2. In addition, we show that Zfp206 physically interacts with both Oct4 and Sox2. These data demonstrate that Zfp206 is a key component of the core transcriptional regulatory network and together with Oct4 and Sox2 regulates differentiation of ESC.Pluripotency, the potential to give rise to all lineages of the developing embryo, is a unique and defining characteristic of mammalian embryonic stem cells (ESC).2 Pluripotent ESC, like the inner cell mass of the embryo from which they were derived, exist in a developmental state that is poised to respond to extracellular signals that specify unique patterns of cellular differentiation. ESC responding to extrinsic cues must undergo transitions from a self-renewing and pluripotent state to one of many alternative states of differentiation. Early genomics approaches have revealed transcriptional regulatory networks that are responsible for maintaining ESC pluripotency (1, 2). Two essential regulators of pluripotency are the transcription factors (TF) Oct4 and Sox2. Knockdown of these transcription factors results in loss of ESC pluripotency and induction of nonspecific differentiation (3). The importance of Oct4 and Sox2 in pluripotency is underscored by their ability to reprogram differentiated fibroblasts into induced pluripotent stemlike cells (4). More recently, thousands of direct target genes regulated by Oct4 and Sox2 have been identified through comprehensive, genome-wide chromatin immunoprecipitation studies (5, 6). Many of the Oct4/Sox2 targets are genes encoding other transcriptional regulators, including several that also have been found to play a role in regulating pluripotency, such as Nanog, Esrrb, Tcf3, Tcl1, Zfp281, Zic3, and Sall4 (3,7,[8][9][10][11][12].Zfp206 is another transcription factor that is specifically expressed in ESC (13,14) and is directly regulated by Oct4 and Sox2 (15). Zfp206 was implicated as a pluripotency factor because it was found highly expressed in undifferentiated ESC and the inner cell mass of the preimplantation embryo, but not in differentiated ESC or trophectoderm. Knockdown of Zfp206 expression induces ESC differentiation, whereas its sustained overexpression impedes retinoic acid induced differentiation of ESC, thus establishing that Zfp206 is a regulator of pluripotency (13). Zfp206 encodes a protein that contains 14 zinc fingers, although alte...