“…To compare the molecular responses of surface fish and cavefish to the emulated hypoxic environment described above, qPCR analyses were performed using marker genes for hypoxia and hypoxia-related metabolic changes. We examined hif1al , a homologue of zebrafish hif3a that is transcriptionally regulated by the HIF1 hypoxia master regulator (Pasanen et al, 2010), and other genes controlled by HIF1 (Iyer et al, 1998, Kim et al, 2006, Cui et al, 2017): hexokinase 1 ( hk1 ), which is involved in glycolysis, lactate dehydrogenase a ( ldha ), which is involved in fermentation, and pyruvate dehydrogenase kinase1 ( pdk1 ), which is involved in inhibiting the TCA cycle in mitochondria. In addition, genes were assayed that are functionally associated with hypoxia or hypoxia induced processes, but not known to be controlled by HIF1: ATP-dependent 6-phosphofructokinase ( pfkma ), which is involved in glycolysis (Ptashne et al, 1983), lactate dehydrogenase b ( ldhb ) and monocarboxylate transporter1 ( mct1 ), which are involved in fermentation (Ždralević et al, 2018; Miranda-Gonçalves, 2016), and pyruvate dehydrogenase kinase 2 ( pdk2 ), which functions similarly to pdk1 but is regulated by hormones and insulin signaling pathways (Jeong et al, 2012).…”