The retinotectal map is the best characterized model system to study how axons respond to guidance cues during the formation of the nervous system. Recent studies have shown that the critical event in forming this map is topographic-specific axon branching. To elucidate the in vivo role of the repulsive cue ephrin-A5 in this event, we used chromophore-assisted laser inactivation (CALI) to generate acute loss of ephrin-A5 function in localized areas of the posterior tectum of chick embryos in ovo and analyzed the resulting changes of retinal projections during initial outgrowth (E11) and when retinal axons arborize in the deep layers in the tectum (E12). We confirmed that ephrin-A5 functions to restrict initial axon outgrowth at E11. At E12, CALI of ephrin-A5 did not affect the extent of axon outgrowth on the tectal surface but instead caused ectopic arborization posterior to the topographically correct site in deeper layers of the tectum. This shows that ephrin-A5 restricts arborization during this critical process for developing the retinotopic map. CALI provides an approach to inactivate in vivo function in higher vertebrates with high temporal and spatial specificity that may have wide application.T he retinotectal projection is a well established model system to study mechanisms that form the topographic map of neural connections in the brain. It is thought that molecules expressed in gradients guide axons to their precise topographic targets. This chemoaffinity hypothesis proposed by Sperry (1) has been supported by the identification of molecular cues expressed in gradients in the retina and in the tectum (2). One important guidance cue is ephrin-A5 (3). The graded expression of ephrin-A ligands in the tectum coupled with expression of the Eph receptors that bind these ligands in retinal axons provides a potential molecular mechanism for defining the anteriorposterior (A-P) map (3, 4). Ephrin-A5 (5) is predominantly expressed in the posterior half of the chick tectum in a steep gradient, whereas a second ephrin, ephrin-A2 (6), is expressed in a shallower gradient across the entire tectum (7), and both gradients exist throughout the formation of the retinotectal map. These expression patterns suggest that ephrin-A5 and ephrin-A2 act in the graded repulsion of retinal axons involved in mapping. This notion is supported by aberrant retinal axon extension beyond their target areas observed in embryos with single and double deletions of the ephrin-A5 and ephrin-A2 genes (8, 9). These genetic deletion studies showed the overall importance of ephrin-A ligands as topographic labels, but how these ligands act in vivo has not been demonstrated.In mammals and avians, the development of topographical order occurs through a multistep process: initial axon outgrowth, topographically specific arborization, and remodeling (10, 11). Initial axon outgrowth is relatively inaccurate, and axons often overshoot beyond their correct termination zone (TZ). Topographically specific branching and arborization in higher vertebrates ...