2019
DOI: 10.1111/ppa.12974
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Abstract: Very limited information is available on the origin, diversity and evolution of Plum pox virus (PPV) 'Turkey' (T) strain. Phylogenetic analyses based on partial sequences of 421 isolates and complete genome sequences of 57 isolates, representing the geographical distribution of PPV-T in Turkey, revealed the existence of several monophyletic and, in some cases, geographically limited groups within the PPV-T strain (Ankara-Konya1-Kayseri, Ankara-Balkan, Istanbul, Konya2 and Balkan). PPV-T diversity (0.018%) was … Show more

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Cited by 17 publications
(12 citation statements)
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“…There are several global studies of the population structures of RNA viruses of human and other animals, but few of those of plants [36,37]. Several papers have been published reporting sequence analyses of regional populations of PPV [38][39][40][41], allowing the local spread and evolution of particular strains to be identified [42][43][44]. Despite these efforts, the global structure of the PPV population has not yet been determined, although it is now possible, as currently (January 2019) there are more than 200 complete genomic sequences of various isolates of PPV available in the GenBank database (https://www.…”
Section: Introductionmentioning
confidence: 99%
“…There are several global studies of the population structures of RNA viruses of human and other animals, but few of those of plants [36,37]. Several papers have been published reporting sequence analyses of regional populations of PPV [38][39][40][41], allowing the local spread and evolution of particular strains to be identified [42][43][44]. Despite these efforts, the global structure of the PPV population has not yet been determined, although it is now possible, as currently (January 2019) there are more than 200 complete genomic sequences of various isolates of PPV available in the GenBank database (https://www.…”
Section: Introductionmentioning
confidence: 99%
“…Leaf samples from about 1850 stone fruit trees were collected when suspecting PPV symptoms. PPV-Rec isolates were determined by partial genome sequencing as described in the previous reports (Gürcan et al, 2020;Teber et al, 2019). Briefly, total RNA was isolated from symptomatic leaf samples using a commercial kit (Roche, Indianapolis, IN, USA).…”
Section: Sample Information and Isolate Sequencingmentioning
confidence: 99%
“…Briefly, total RNA was isolated from symptomatic leaf samples using a commercial kit (Roche, Indianapolis, IN, USA). Two genomic regions were targeted: (i) the region corresponding to the C-terminus (C-ter) of the P3 gene and the 6 K1 gene, (C-ter)P3/6 K1 (Glasa et al, 2002); and (ii) that corresponding to the Cterminus (C-ter) of the coat protein (CP) and the 3′ noncoding region, (C-ter)CP/3′NCR (Teber et al, 2019). These fragments correspond to nucleotides (nt) 2915-3750 and 8727-9784 (numbered according to GenBank AJ243957 and HF585104, respectively).…”
Section: Sample Information and Isolate Sequencingmentioning
confidence: 99%
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