Genetic Diversity and Ancestral Relationships of Red Junglefowls and Domestic Chickens in Southeast Asia

Riztyan,; Kawabe, Kentaro; Shimogiri, Takeshi; Kawamoto, Y.; Rerkamnuaychoke, Worawut; Nishida, Takao; Okamoto, Susumu

doi:10.2141/jpsa.0130206

Cited by 4 publications

(2 citation statements)

References 21 publications

(24 reference statements)

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“…The quality of genomic DNA in mtDNA COI and Cyt b genes based on a ratio of 260 per 280 from blood samples of red junglefowl from North Sulawesi ranged between 1.807-1.880 and 1.857-1.883, respectively (Kamagi, 2017). Studies using microsatellite genes that have been carried out include Dorji et al (2012); Riztyan et al (2014); Phuc & Berres (2018);and Lawal et al (2018). However, studies with genetic markers of the mtDNA COI gene have not been carried out.…”

Section: Introductionmentioning

confidence: 99%

DNA Barcode of Red Junglefowl Gallus gallus L, 1958 (Aves: Phasianidae) of Sumatra Based on Mitochondrial COI DNA Gene

et al. 2022

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Genetic data of red junglefowl (Gallus gallus) from southern Sumatra is valuable for conservation efforts in Indonesia. A mitochondrial COI DNA gene sequencing was performed to elucidate its genetic character, single nucleotide polymorphism, genetic distance, and phylogeny. Blood samples (±0.5 ml) from 20 individuals of Gallus gallus were taken from the living collections of the people of Bengkulu Province (Central Bengkulu Regency and Seluma Regency) and South Sumatra Province (North Musi Rawas Regency) from May to November 2021. Total DNA isolation followed the procedure of The Spin-Column Protocol Kit uses the Dneasy® Blood and Tissue Kit, Qiagen. DNA replication using the Polymerase Chain Reaction technique with primers (COIGG_F and COIGG_R) using MEGA 10.0 software and Bioedit for data analysis. The results revealed716 conserved sites, 16 variable sites, 9 parsimony sites, and 6 singleton sites from the 732 bp nucleotide sequence. Six specific sites (SNPs) as barcodes for Sumatran Junglefowl were found at sequences 51, 273, 327, 721, 729, and 732. The mean genetic distance between individuals was 0.1%, between populations was 0.8%, between species was 7.4%, and between genera was 15.5%. The red junglefowlof South Sumatra Province and Bengkulu Province are closely related with 98% bootstrapping and separated from other Gallus in the same group (ingroup) with 100% bootstrap. The Gallus-gallus group is quite far apart from the outgroup species in the Phasianidae family with 47-100% bootstrap. Red junglefowl from southern Sumatra has genetic differences from other chickens in the world and these differences can be used as a species barcode and as origin identification the widely traded red jungle fowl.

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Section: Introductionmentioning

confidence: 99%

DNA Barcode of Red Junglefowl Gallus gallus L, 1958 (Aves: Phasianidae) of Sumatra Based on Mitochondrial COI DNA Gene

et al. 2022

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“…The exact archaeological record shows that domestic fowl originated from the Mohenjo-Daro Region in India approximately 4000 years ago ( Sewell and Guha, 1931 ; Zeuner, 1963 ). The strong relationships between red jungle fowl ( Gallus gallus ) and various breeds of domestic fowl has been demonstrated in Southeast Asia using molecular phylogenetic data ( Akishinonomiya et al , 1996 ; Niu et al , 2002 ; Kanginakudru et al , 2008 ; Riztyan et al , 2014 ), whereas the Ceylon jungle fowl has also partially provided genes to the domestic fowl lineage ( Nishibori et al , 2005 ; Eriksson et al , 2008 ; Tixier-Boichard et al , 2011 ). The Southeast and South Asian Districts have shown early domestication of fowl and later became areas involved in the creation of breeds.…”

Section: Introductionmentioning

confidence: 99%

Musculoskeletal System of Huge Tarsometatarsal Region in the Dong Tao Fowls from North Vietnam

et al. 2017

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A macroscopic examination of the huge leg of the Dong Tao breed from North Vietnam was conducted. Bone and muscular tendon morphometric data demonstrated that the Dong Tao breed was equipped with the extraordinarily thick and large tarsometatarsal bone and distal parts of the related tibiotarsus regions. Morphological differences between dorsal and plantar sides were clearly observed. First, on the dorsal side, fleshy bundles were extended effectively using the enlarged dorsal surface of tarsometatarsal bone shown as Musuculus extensor digitorum brevis, M. extensor digiti I brevis and M. adductor digiti IV. The strong and fleshy extensor bellies of M. tibialis cranialis and M. extensor digitorum longus were enlarged in the crural region, functioning to dorsally pull the heavy tarsometatarsal region through the ankle joint. Second, on the plantar side, the flexor tendon groups around the ankle joint were wider and thicker than those of other ordinary breeds, possibly to stabilize the tarsometatarsal bone and to flex the phalange as observed in M. flexor perforatus digiti II, M. flexor perforans et perforatus digiti II, M. flexor perforatus digiti III, M. flexor perforans et perforatus digiti III, M. flexor perforatus digiti IV, and M. flexor perforans digitorum profundus. The mass of the huge tarsometatarsal region does not contribute to effective locomotion in the Dong Tao fowl in comparison with that associated with normal breeds. However, we suggest that these morphological changes in the musculoskeletal system may functionally compensate for the physical disadvantages of the large weight of the distal part of the hindlimb in the Dong Tao fowl.

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Geographical variation in the skeletal morphology of red jungle fowl

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Tsunekawa

Sonoe

et al. 2017

British Poultry Science

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1. The skulls and postcranial skeletons of the red jungle fowl (Gallus gallus) were compared osteometrically between the populations from North and South Vietnam, North and Central Laos and Southeast Bangladesh. The populations include the three subspecies of G. g. spadiceus, G. g. gallus and G. g. murghi and were sampled to reveal the geographical morphological variations among populations in G. gallus. 2. The morphometric characteristics of subspecies murghi could be clearly distinguished from those of the other subspecies using a canonical discriminant analysis. However, the size and shape of the skull of the gallus population from South Vietnam were not statistically different from that of the subspecies spadiceus from North Laos. The canonical discriminant scores also clearly indicated that there were morphological similarities in the skulls of the populations from North Laos and South Vietnam. 3. From the results, therefore, it is concluded that red jungle fowls do not exhibit high levels of osteometric variation between geographical localities at least within the Indochinese Peninsula. 4. This contrasts with previous studies which have described these subspecies as having various external morphological differences and have argued that zoogeographical barriers exist between the north and south areas of the Indochinese Peninsula.

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Genetic Diversity and Ancestral Relationships of Red Junglefowls and Domestic Chickens in Southeast Asia

Cited by 4 publications

References 21 publications

DNA Barcode of Red Junglefowl Gallus gallus L, 1958 (Aves: Phasianidae) of Sumatra Based on Mitochondrial COI DNA Gene

DNA Barcode of Red Junglefowl Gallus gallus L, 1958 (Aves: Phasianidae) of Sumatra Based on Mitochondrial COI DNA Gene

Musculoskeletal System of Huge Tarsometatarsal Region in the Dong Tao Fowls from North Vietnam

Geographical variation in the skeletal morphology of red jungle fowl

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