Environmental bacteria are most often
endowed with native surface-attachment
programs that frequently conflict with efforts to engineer biofilms
and synthetic communities with given tridimensional architectures.
In this work, we report the editing of the genome of Pseudomonas
putida KT2440 for stripping the cells of most outer-facing
structures of the bacterial envelope that mediate motion, binding
to surfaces, and biofilm formation. To this end, 23 segments of the P. putida chromosome encoding a suite of such functions
were deleted, resulting in the surface-naked strain EM371, the physical
properties of which changed dramatically in respect to the wild type
counterpart. As a consequence, surface-edited P. putida cells were unable to form biofilms on solid supports and, because
of the swimming deficiency and other alterations, showed a much faster
sedimentation in liquid media. Surface-naked bacteria were then used
as carriers of interacting partners (e.g., Jun–Fos domains)
ectopically expressed by means of an autotransporter display system
on the now easily accessible cell envelope. Abstraction of individual
bacteria as adhesin-coated spherocylinders enabled rigorous quantitative
description of the multicell interplay brought about by thereby engineered
physical interactions. The model was then applied to parametrize the
data extracted from automated analysis of confocal microscopy images
of the experimentally assembled bacterial flocks for analyzing their
structure and distribution. The resulting data not only corroborated
the value of P. putida EM371 over the parental strain
as a platform for display artificial adhesins but also provided a
strategy for rational engineering of catalytic communities.