This tutorial is intended for biologists interested in how focused ion beam (FIB) instruments might be used in their research. It will consist of a basic introduction to FIB technology, a description of the most relevant techniques used in biology, and a selection of application examples.A FIB instrument is similar to an SEM, but produces a beam of positive ions (usually gallium) instead of electrons [1]. The ions, much heaver than electrons, can be focused by electrostatic lenses into a spot on the specimen that is a few nanometers in diameter. At beam currents of tens of picoamps or a few nanoamps, specimen material can be sputtered away to a depth of about 10 to 100 nm with each pass of the beam. This allows precision cutting and shaping of the specimen. Many modern FIB instruments include an SEM on the same vacuum chamber, the two-column "FIB-SEM". The use of SEM makes it more practical to image the specimen after cutting, without further damage.The FIB is used to prepare cross-sections or to open "windows" in the specimen for an internal view by SEM, and for making specimens for TEM. When done properly, heterogeneous hard/soft materials can be milled with a smooth surface. Frozen biological material can also be FIB-milled and observed by SEM [2] or transferred to the TEM [3].Use of FIB for TEM preparation takes three forms: (1) Thinning a portion of the specimen to TEM transparency (the "H-bar" method); this can be done at room temperature or under cryo conditions; (2) preparing a cylindrical specimen that is particularly suited to electron tomography [e.g. 4]; and (3) extracting a thin "lamella" from within a specimen and placing it on a TEM specimen holder (the "lift-out" method") [5].Probably the FIB technique of most general impact in biology is "FIB tomography", which does not involve TEM. Here, specimens are prepared by embedding in resin, after osmium fixation and subsequent en-bloc heavy-metal staining [6]. After mechanical trimming to the area of interest, the surface is alternately FIB-milled and imaged by SEM. At each milling step, about 5-20 nm of material is removed, and then SEM an image is recorded using backscattered electron imaging. The x-y resolution can be 5 nm or greater. This iterative process can proceed under software control, and it can run for days, yielding a relatively highresolution 3-D reconstruction over a large area [7,8,9]. All of the above techniques have been used extensively for over a decade in materials science, and almost as long, although with far less frequency, in biology. The first application of FIB in biology was in 1993, in which FIB was used to cut into a mite in order to image internal features [10]. Dental research represents the single largest number of publications so far [e.g.