Five improved sesame reference genomes and genome resequencing unveil the contribution of structural variants to genetic diversity and yield‐related traits variation

Song, Shengnan; Dossou, Senouwa Segla Koffi; Meng, Minghui; Chen, Sheng; Li, Huan; Zhou, Rong; Li, Donghua; Xu, Pao; You, Jing; Wang, Linhai

doi:10.1111/pbi.14092

Cited by 1 publication

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References 5 publications

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“…SeqPrep (https://github.com/jstjohn/SeqPrep; access on 1 April 2024) and Sickle (https://github.com/najoshi/sickle; access on 15 March 2024) software were used to check the quality of raw paired ends. The clean reads were aligned to the sesame reference genome [38] by the HISAT2 (http://ccb.jhu.edu/software/hisat2/index.shtml; access on 10 March 2024) software [39]. Finally, we assembled the mapped reads using StringTie (http://www.string-db.org/; access on 18 March 2024) [40].…”

Section: Rna Extraction Library Construction Sequencing and Alignmentmentioning

confidence: 99%

Biochemical and Molecular Insights into Variation in Sesame Seed Antioxidant Capability as Revealed by Metabolomics and Transcriptomics Analysis

Dossou,

Luo,

Deng

et al. 2024

Antioxidants

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Sesame seeds are important resources for relieving oxidation stress-related diseases. Although a significant variation in seeds’ antioxidant capability is observed, the underlying biochemical and molecular basis remains elusive. Thus, this study aimed to reveal major seed components and key molecular mechanisms that drive the variability of seeds’ antioxidant activity (AOA) using a panel of 400 sesame accessions. The seeds’ AOA, total flavonoid, and phenolic contents varied from 2.03 to 78.5%, 0.072 to 3.104 mg CAE/g, and 2.717 to 21.98 mg GAE/g, respectively. Analyses revealed that flavonoids and phenolic acids are the main contributors to seeds’ AOA variation, irrespective of seed coat color. LC-MS-based polyphenol profiling of high (HA) and low (LA) antioxidant seeds uncovered 320 differentially accumulated phenolic compounds (DAPs), including 311 up-regulated in HA seeds. Tricin, persicoside, 5,7,4′,5′-tetrahydro-3′,6-dimethoxyflavone, 8-methoxyapigenin, and 6,7,8-tetrahydroxy-5-methoxyflavone were the top five up-regulated in HA. Comparative transcriptome analysis at three seed developmental stages identified 627~2357 DEGs and unveiled that differential regulation of flavonoid biosynthesis, phenylpropanoid biosynthesis, and stilbene biosynthesis were the key underlying mechanisms of seed antioxidant capacity variation. Major differentially regulated phenylpropanoid structural genes and transcription factors were identified. SINPZ0000571 (MYB), SINPZ0401118 (NAC), and SINPZ0500871 (C3H) were the most highly induced TFs in HA. Our findings may enhance quality breeding.

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Section: Rna Extraction Library Construction Sequencing and Alignmentmentioning

confidence: 99%

Biochemical and Molecular Insights into Variation in Sesame Seed Antioxidant Capability as Revealed by Metabolomics and Transcriptomics Analysis

Dossou,

Luo,

Deng

et al. 2024

Antioxidants

Self Cite

View full text Add to dashboard Cite

show abstract

Five improved sesame reference genomes and genome resequencing unveil the contribution of structural variants to genetic diversity and yield‐related traits variation

Cited by 1 publication

References 5 publications

Biochemical and Molecular Insights into Variation in Sesame Seed Antioxidant Capability as Revealed by Metabolomics and Transcriptomics Analysis

Biochemical and Molecular Insights into Variation in Sesame Seed Antioxidant Capability as Revealed by Metabolomics and Transcriptomics Analysis

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