Conventional preparation of lignin micro-/nanoparticles (LMNPs) often needs multiple steps accompanied by high cost, low efficiency, and low yield. Herein, this study established a polyhydric alcohol-based deep eutectic solvent (PA-DES) fractionation for direct LMNP assembly from raw lignocellulose. The results indicated that lignin was significantly extracted by 41.55−70.33% depending on the PA-DES varieties. With lignin removal, the substrate showed high glucan enzymatic saccharification from 70.44 to 100%. Specially, over 90% lignin could be recovered in each PA-DES, and the obtained LMNPs showed quite uniform spherical morphology with a tunable size of 550−3254 nm and narrow polydispersity index (PDI) of 0.295−0.398. The proposed DES showed a near theoretical recovery yield, which still featured excellent fractionation performance even after three cycles of reuse. The findings highlight the simultaneous utilization of cellulose and lignin in a one-pot biomass fractionation under mild conditions with sugars and LMNPs as the coproducts.