Exon prediction in eucaryotic genomes

IGLUE: A lattice-based constructive induction system

“…These different lattice-based learning systems have demonstrated the efficiency of using a lattice approach compared to other tree-based or decision-list methods. Some of these systems have been successfully applied onto real problems coming from different domains, such as biology [45] and archeology [41].…”

IGLUE: A lattice-based constructive induction system

“…These different lattice-based learning systems have demonstrated the efficiency of using a lattice approach compared to other tree-based or decision-list methods. Some of these systems have been successfully applied onto real problems coming from different domains, such as biology [45] and archeology [41].…”

Exon/intron discrimination using the finite induction pattern matching technique

“…The method correctly identified 80% of the true splice junctions. Lapedes, et al (1990) A scanning model for acceptor site recognition was simulated by the AMELIE system (Vignal, et al, 1996). Sequences were scanned for the existence (or nonexistence) of the dinucleotides AG upstream (to the left of) the AG acceptor site.…”

Hybrid Approach Using SVM and MM2 in Splice Site Junction Identification

“…Splice site identification on the basis of models of site recognition and sequence data (supported by experimental confirmations) are described in a multi-agent system namely AMELIE [10]. This system, and the NetPlantGene are the two independent systems devoted to the recognition of splice sites in plant and human genomes respectively [11]. The HMM system, proposed by Salzberg et al [12] is used to predict translation start site and splice site in the eukaryotic genes.…”

IGLUE: A lattice-based constructive induction system

“…These different lattice-based learning systems have demonstrated the efficiency of using a lattice approach compared to other tree-based or decision-list methods. Some of these systems have been successfully applied onto real problems coming from different domains, such as biology [45] and archeology [41].…”

Exon/intron discrimination using the finite induction pattern matching technique

“…The method correctly identified 80% of the true splice junctions. Lapedes, et al (1990) A scanning model for acceptor site recognition was simulated by the AMELIE system (Vignal, et al, 1996). Sequences were scanned for the existence (or nonexistence) of the dinucleotides AG upstream (to the left of) the AG acceptor site.…”

Hybrid Approach Using SVM and MM2 in Splice Site Junction Identification

“…Splice site identification on the basis of models of site recognition and sequence data (supported by experimental confirmations) are described in a multi-agent system namely AMELIE [10]. This system, and the NetPlantGene are the two independent systems devoted to the recognition of splice sites in plant and human genomes respectively [11]. The HMM system, proposed by Salzberg et al [12] is used to predict translation start site and splice site in the eukaryotic genes.…”

IGLUE: A lattice-based constructive induction system

“…These different lattice-based learning systems have demonstrated the efficiency of using a lattice approach compared to other tree-based or decision-list methods. Some of these systems have been successfully applied onto real problems coming from different domains, such as biology [45] and archeology [41].…”

Exon/intron discrimination using the finite induction pattern matching technique

“…The method correctly identified 80% of the true splice junctions. Lapedes, et al (1990) A scanning model for acceptor site recognition was simulated by the AMELIE system (Vignal, et al, 1996). Sequences were scanned for the existence (or nonexistence) of the dinucleotides AG upstream (to the left of) the AG acceptor site.…”

Hybrid Approach Using SVM and MM2 in Splice Site Junction Identification

“…Splice site identification on the basis of models of site recognition and sequence data (supported by experimental confirmations) are described in a multi-agent system namely AMELIE [10]. This system, and the NetPlantGene are the two independent systems devoted to the recognition of splice sites in plant and human genomes respectively [11]. The HMM system, proposed by Salzberg et al [12] is used to predict translation start site and splice site in the eukaryotic genes.…”