17Global warming has become a critical challenge to food safety, causing severe yield losses of 18 major crops worldwide. Heat acclimation empowers plants to survive under extreme 19 temperature conditions but the potential of beneficial microbes to make plants thermotolerant 20 has not been considered so far. Here, we report that the endophytic bacterium Enterobacter sp. 21 SA187 induces heat tolerance in Arabidopsis thaliana by reprogramming the plant 22 transcriptome to a similar extent as acclimation. Acclimation induces priming of heat stress 23 memory genes such as APX2 and HSP18.2 via the transcription factors HSFA1A, B, D, and E and 24 the downstream master regulator HSFA2. hsfa1a,b,d,e and hsfa2 mutants compromised both 25 acclimation and bacterial priming through the same pathway of HSF transcription factors. 26 However, while acclimation transiently modifies H3K4me3 levels at heat stress memory gene 27 loci, SA187 induces the constitutive priming of these loci. In summary, we demonstrate the 28 molecular mechanism by which SA187 imparts thermotolerance in A. thaliana, suggesting that 29 beneficial microbes might be a promising way to enhance crop production under global 30 warming conditions. 31 32 33 34 35 36 10144⁰C heat stress was applied for 30 minutes on day 11. After incubation of four days at 22⁰C, 102 plants were analyzed for phenotypes and transcriptomes. For HS treatment, 11 day old plants 103 that were grown at 22⁰C, were directly exposed to 44⁰C for 30 min before further incubation 104 for four days at 22⁰C and inspected on day 15. Non heat stressed (NHS) plants were grown at 105 22⁰C for 15 days in parallel as control reference (Fig 1 A-B). At day 15, we quantified fresh 106 weight, % bleached/green leaves and survival of plants upon the different heat treatments. 107 Compared to NHS plants, HS treatment resulted in a major reduction of plant fresh weight and 108 survival as seen in the number of bleached leaves and the ACC treatment significantly protected 109 plants from HS (Fig 2A-E). Comparing SA187-colonized (HS+187) to non-colonized plants (HS), 110 HS+187 exhibited 56.71% higher fresh weight, 25.91% better survival and 34% more of green 111 leaves (Fig 2 A-D). This effect is HS specific, as under control conditions of 22⁰C, SA187-112 colonized (NHS+187) and non-colonized plants (NHS) displayed comparable growth, fresh 113 weight and survival levels (Fig 2 A-E). SA187-colonized plants that were in addition heat 114 acclimated (ACC+187) showed the highest fresh weight, survival and green/bleached levels 115 among all the heat stress treatments (Fig 2A-E). These data show that SA187 protects 116 Arabidopsis thaliana from heat stress.
118Overview of the transcriptional response of A. thaliana during heat stress 119 In order to determine the genome-wide extent of heat stress-induced changes, we performed 120 transcriptome profiling of SA187-colonized and non-colonized 15 day old plants under non-heat 121 stress (NHS), heat acclimated (ACC) and direct heat str...