An anaerobic, nonsporulating, gram-positive bacterium was isolated from blood and bile pus cultures of a 70-year-old man with bacteremic acute cholecystitis. The API 20A system showed that it was 70% Actinomyces naeslundii and 30% Bifidobacterium species, whereas the Vitek ANI system and the ATB ID32A Expression system showed that it was "unidentified." The 16S rRNA gene of the strain was amplified and sequenced. There were 3 base differences between the nucleotide sequence of the isolate and that of Lactobacillus salivarius subsp. salivarius or L. salivarius subsp. salicinius, indicating that the isolate was a strain of L. salivarius. The patient responded to cholecystectomy and a 2-week course of antibiotic treatment. Identification of the organism in the present study was important because the duration of antibiotic therapy would have been entirely different depending on the organism. If the bacterium had been identified as Actinomyces, penicillin for 6 months would have been the regimen of choice. However, it was Lactobacillus, and a 2-week course of antibiotic was sufficient.Identification of anaerobic, nonsporulating, gram-positive bacteria in the clinical microbiology laboratory is traditionally performed by isolation of the organism and phenotypic study of the organism by elucidation of its morphological and biochemical characteristics and metabolic end products. However, these methods have two major drawbacks. First, for organic acid analysis by gas chromatography, special equipment and expertise are required but are generally not available in most routine clinical microbiology laboratories. Second, we are occasionally faced with organisms with biochemical characteristics that do not match the patterns for any known genus and species.Since the discovery of PCR and DNA sequencing, comparison of the gene sequences of bacterial species showed that the 16S rRNA gene is highly conserved within a species and among species of the same genus and hence can be used as the new "gold standard" for determination of the species of bacteria. By use of this new standard, phylogenetic trees, based on base differences between species, are constructed; and bacteria are classified and reclassified into new genera (12, 13). Furthermore, noncultivable organisms and organisms with ambiguous biochemical profiles can be classified and identified (15,16). Recently, we have reported on the application of 16S rRNA gene sequencing to the identification of clinical isolates with ambiguous biochemical profiles (23,24,26,27) and a bacterium that was noncultivable (6). Here, we report on the application of such a technique to the identification of a strain of Lactobacillus salivarius isolated from the blood and gallbladder pus of a patient with acute cholecystitis and bacteremia and discuss the significance of identification of the organism.All clinical data were collected prospectively, as described in our previous publication (9). Clinical specimens were collected and handled by standard protocols. The Vitek ANI system (bioMerieux Vi...