2020
DOI: 10.1038/s41597-020-0441-7
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Abstract: the two subspecies of atlantic bay scallop (Argopecten irradians), A. i. irradians and A. i. concentricus, are economically important aquacultural species in northern and southern China. Here, we performed the whole-genome sequencing, assembly, and gene annotation and produced draft genomes for both subspecies. In total, 253.17 and 272.97 gigabases (Gb) of raw reads were generated from Illumina Hiseq and PacBio platforms for A. i. irradians and A. i. concentricus, respectively. Draft genomes of 835.7 Mb and 87… Show more

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Cited by 28 publications
(10 citation statements)
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References 46 publications
(43 reference statements)
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“…The available Tssk protein sequences of representative organisms were downloaded from the NCBI 1 and UniProt 2 and then aligned with the bay scallop genome and transcriptomes ( Liu et al, 2020 ) with the E value threshold of 1e-5. The resultant scallop sequences were further confirmed by BLASTX against the non-redundant protein sequences (nr) database.…”
Section: Methodsmentioning
confidence: 99%
“…The available Tssk protein sequences of representative organisms were downloaded from the NCBI 1 and UniProt 2 and then aligned with the bay scallop genome and transcriptomes ( Liu et al, 2020 ) with the E value threshold of 1e-5. The resultant scallop sequences were further confirmed by BLASTX against the non-redundant protein sequences (nr) database.…”
Section: Methodsmentioning
confidence: 99%
“…We reported the identification of 1,568,087 SNP loci in the domestic Bactrian camel in four regions of China, using RAD-seq. When read mapping, we used higher “ k ”-values, and the parameter settings are within the reasonable range of the software default ( Cao et al, 2019 ; Shibuya and Comin, 2019 ; Liu et al, 2020 ). The filtered SNPs were subjected to LD attenuation analysis and nucleotide diversity analysis (π).…”
Section: Discussionmentioning
confidence: 99%
“…We aligned the raw data to the Bay scallop reference genome (BioSample accessions: SAMN08322131; Liu et al, 2020 using the mem algorithm in BWA (Burrows-Wheeler Alignment) ( Li and Durbin, 2009 ). We then used Samtools to convert the file format and sort the subsequent alignment sequences ( Li et al, 2009 ).…”
Section: Methodsmentioning
confidence: 99%