2008
DOI: 10.1007/s00251-008-0310-6
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Dominance of an alternative CLIP sequence in the celiac disease associated HLA-DQ2 molecule

Abstract: During assembly, HLA class II molecules associate with the invariant chain. As the result, the peptide-binding groove is occupied by an invariant chain peptide termed CLIP (class-II-associated invariant chain peptide; sequence MRMATPLLM). By mass spectrometry, we have now characterized peptides that are naturally present in HLA-DQ2. This analysis revealed that 22 variants of Ii-derived peptides are associated with HLA-DQ2. Strikingly, the large majority of those do not contain the conventional CLIP sequence MR… Show more

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Cited by 15 publications
(17 citation statements)
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“…Our results demonstrate that CLIP2 associates with DQ molecules other than DQ2, including the T1D‐protective DQ6 and T1D‐neutral DQ1 molecules. It is also interesting to note that CLIP2 peptides were also present in samples from cells expressing DQ2+Ii+DM, consistent with prior findings indicating the CLIP2 register has a relatively high affinity for DQ2 .…”
Section: Resultssupporting
confidence: 87%
“…Our results demonstrate that CLIP2 associates with DQ molecules other than DQ2, including the T1D‐protective DQ6 and T1D‐neutral DQ1 molecules. It is also interesting to note that CLIP2 peptides were also present in samples from cells expressing DQ2+Ii+DM, consistent with prior findings indicating the CLIP2 register has a relatively high affinity for DQ2 .…”
Section: Resultssupporting
confidence: 87%
“…Most MHCII alleles bind CLIP in a single binding register (“CLIP1”), shown in the crystal structure of CLIP bound to DR3 and using Met91 (human Ii numbering) to occupy the P1 position of the groove (19). DQ2.5, however, is able to bind in a non-canonical “CLIP2” binding register, with Pro96 in P1 (78-79). In vitro , the rate of spontaneous CLIP release, in either register, from recombinant soluble DQ2.5 molecules is slower than CLIP release from DR3, and even slower than that of some gliadin peptides.…”
Section: Celiac Diseasementioning
confidence: 99%
“…Recently, an alternative CLIP sequence was discovered with a twofold lower IC 50 for DQ2. 36 However, to be consistent and obtain comparable results, the original CLIP peptide has been used in the binding assays. Subsequently, 50 ml of the peptide sample was applied to the SPV-L3/HLA-DQ-coated wells.…”
Section: Cell-free Peptide-binding Assaysmentioning
confidence: 99%