This study investigated whether MSI status can be used as a prognostic biomarker and whether it is helpful for predicting which patients will benefit from 5-FU based adjuvant chemotherapy. Between 2005 and2008, an MSI status examination was performed in 1,990 gastric cancer patients who had undergone curative gastrectomy for gastric adenocarcinoma. MSI was analyzed by PCR amplification with fluorescent dye-labeled primers of mononucleotide markers (BAT25 and BAT26) and dinucleotide markers (D5S346, D2S123 and D17S250) specific to the microsatellite loci. Patients with MSI-H tumors accounted for 8.5% (n 5 170) of the total study population. They tended to be older and female and to have distal tumor location, lower tumor stage, intestinal type of Lauren classification and differentiated histological type. The disease-free survival curves showed no significant differences between MSS/MSI-L and MSI-H patients at each stage of I, II, III and IV. In gastric cancer patients with stage II and III, 5-FU-based adjuvant chemotherapy showed better disease-free survival in the MSS/MSI-L group, but showed no benefits in the MSI-H group. By multivariate analysis, patients with MSS/MSI-L tumors benefited from 5-FU-based adjuvant chemotherapy in terms of tumor disease-free survival. MSI status in gastric cancer is not itself a prognostic indicator. However, it appears to be a possible guidance for the use of 5-FU-based chemotherapy in stage II and III gastric cancers after R0 resection.Microsatellite instability (MSI) is characterized by novel sized alleles detected in microsatellite sequences found in the DNA of carcinoma tissue that is not present in normal constitutional DNA. Although MSI has been reported along with several types of cancers, it is thought to be an important mechanism of hereditary nonpolyposis colorectal cancer (HNPCC), which occurs by germline mutations in one of the DNA mismatch repair (MMR) genes such as MLH1, MSH2, MSH6 and PMS2. The clinicopathological characteristics of MSIþ colorectal cancers have been widely studied: proximal location, reduced lymph node metastasis and better overall survival rate.1 Recently, several studies analyzed the relationship between MSI and benefits from adjuvant 5-Fluorouracil (5-FU)-based chemotherapy in colon cancer.2,3 These studies reflect that MSI status has an important role in clinical practices for deciding tumor characteristics, predicting prognosis and planning adjuvant treatment.In gastric cancer, the role of MSI remains to be proven, and it is difficult to judge its value in clinical application. Many studies have also attempted to elucidate the clinical significances of MSI in gastric cancer, suggesting that gastric cancers with a high frequency of MSI are associated with specific clinicopathological characteristics: intestinal type differentiation, reduced lymph node metastasis and better survival rates. However, these findings are not consistent and each study yields controversial results. Some studies reported that the MSI-H phenotype was associated with be...