The genes encoding several synaptic proteins, including acetylcholine receptors, acetylcholinesterase, and the muscle-specific kinase, MuSK, are expressed selectively by a small number of myofiber nuclei positioned near the synaptic site. Genetic analysis of mutant mice suggests that additional genes, expressed selectively by synaptic nuclei, might encode muscle-derived retrograde signals that regulate the differentiation of motor axon terminals. To identify candidate retrograde signals, we used a microarray screen to identify genes that are preferentially expressed in the synaptic region of muscle, and we analyzed one such gene, CD24, further. We show that CD24, which encodes a small, variably and highly glycosylated, glycosylphosphatidylinositol (GPI)-linked protein, is expressed preferentially by myofiber synaptic nuclei in embryonic and adult muscle, and that CD24 expression is restricted to the central region of muscle independent of innervation. Moreover, we show that CD24 has a role in presynaptic differentiation, because synaptic transmission is depressed and fails entirely, in a cyclical manner, after repetitive stimulation of motor axons in CD24 mutant mice. These deficits in synaptic transmission, which are accompanied by aberrant stimulus-dependent uptake of AM1-43 from axons, indicate that CD24 is required for normal presynaptic maturation and function. Because CD24 is also expressed in some neurons, additional experiments will be required to determine whether pre-or postsynaptic CD24 mediates these effects on presynaptic development and function.heat-stable antigen ͉ neuromuscular synapses ͉ P-selectin ͉ synapse-specific transcription N early one dozen genes, including those encoding acetylcholine receptors (AChRs), acetylcholinesterase (AChE), muscle-specific kinase (MuSK), and utrophin, are expressed selectively by a small number of myofiber nuclei positioned near the synaptic site (1-5). This pattern of gene expression depends on MuSK, a muscle-specific receptor tyrosine kinase that is activated by neurally derived agrin, because ''synapse-specific'' genes are expressed uniformly in muscle from MuSK mutant mice (6). In addition, presynaptic differentiation is MuSKdependent, because motor axons fail to stop and differentiate in agrin or MuSK mutant mice (6, 7). Because MuSK is required for synapse-specific transcription and presynaptic differentiation, these findings raise the possibility that muscle-derived signals, which cause motor axons to stop growing and differentiate, may be expressed preferentially by myofiber synaptic nuclei.Among the known synapse-specific genes, AChR, AChE, MuSK, NCAM, and S-laminin encode for cell surface proteins, suggesting that these proteins could, in principle, function as retrograde signals (1-3, 5, 8). It seems likely, however, that additional genes, encoding cell surface proteins, are transcribed preferentially by myofiber synaptic nuclei. In mammalian muscle, neuromuscular synapses are confined to a narrow zone, near the center of the muscle. As such, the syn...