W-band (95 GHz) pulsed EPR and electron-nuclear double resonance spectroscopic techniques were used to investigate the manganese S1 binding site of the protein concanavalin A in a frozen solution and in a single crystal. 1 H ENDOR spectra were collected by using the Davies ENDOR sequence, whereas Mims ENDOR was applied to record 2 H ENDOR spectra. Different EPR transitions were selected by performing the ENDOR measurements at different magnetic fields within the EPR spectrum. This selection, combined with the large thermal polarization achieved at magnetic fields of ∼3.4 T at low temperatures, allowed the assignment of ENDOR signals to their respective M S manifolds, thus providing the sign of the hyperfine couplings. The exchangeable and nonexchangeable protons were differentiated by comparing 1 H and 2 H ENDOR spectra of a solution of the protein prepared in D 2 O and of crystals soaked in D 2 O. The two imidazole protons, located on the carbons flanking the Mn-bound nitrogen, are magnetically equivalent, situated 3.56 Å from the Mn 2+ and their hyperfine coupling is purely dipolar. The four protons of the two water ligands are all inequivalent, and four values of A | and A ⊥ were determined. All possible combinations of these values yield distances in the range of 2.67 to 3.24 Å and a iso between -1.13 and 1.37 MHz. By limiting a iso to positive values, only four distances remain, 2.67, 2.76, 2.99, and 3.24 Å, corresponding to the four Mn-H water distances.