This study aimed to identify
Mycoplasma bovis
,
Myc. dispar
, and
Myc. bovirhinis
, which are involved in bovine respiratory disease through a multiplex PCR as an alternative to culture’s features that hamper
Mycoplasma
isolation. Nasal swabs were taken from 335 cattle with and without respiratory disease background (RDB) from dairy herds in the central region of Mexico. Each sample was divided in two; the first part was processed for the direct DNA extraction of the nasal swab and the second for
Mycoplasma
isolation, culture, and then the multiplex PCR was performed. In the nasal swabs,
Myc. bovis
was identified in 21.1%;
Myc. dispar
, in 11.8%; and
Myc. bovirhinis
, in 10.8% in cattle with RDB. Isolates were identified as
Myc. bovis
, 20.1%;
Myc. dispar
, 11.8%; and
Myc. bovirhinis
, 6.1%. There is a strong correlation between the presence of
Mycoplasma
identified by PCR and the clinical history of the disease (
ρ
< 0.0000). In animals without RDB,
Myc. bovirhinis
was the only species detected in 6.1% of the samples processed directly for multiplex PCR, and in 2% of the isolates. There is an excellent correlation (kappa 0.803) between the isolation and the 16
S
PCR and a high correlation (kappa 0.75) between the isolation and the multiplex PCR. Therefore, we conclude that the PCR multiplex test is highly sensitive and may be used for the diagnosis and surveillance of the three species in biological samples and mycoplasma isolates.
Supplementary Information
The online version contains supplementary material available at 10.1007/s11250-022-03398-y.