2021
DOI: 10.1186/s12864-020-07350-y
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Abstract: Background Bovine frontonasal dysplasias like arhinencephaly, synophthalmia, cyclopia and anophthalmia are sporadic congenital facial malformations. In this study, computed tomography, necropsy, histopathological examinations and whole genome sequencing on an Illumina NextSeq500 were performed to characterize a stillborn Limousin calf with frontonasal dysplasia. In order to identify private genetic and structural variants, we screened whole genome sequencing data of the affected calf and unaffe… Show more

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Cited by 19 publications
(21 citation statements)
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“…TNFAIP3 : Protein and protein interaction analysis from Islam et al (2020) indicated that TNFAIP3 is one of the kye hub genes that have good binding affinities with repurposed COVID-19 drug candidates which includes dabrafenib, radicicol and AT-7519. Li et al (2021) observed the bimodal gene expression of TNFAIP3 in various immune cells from severely infected COVID-19 patients.…”
Section: Resultsmentioning
confidence: 88%
“…TNFAIP3 : Protein and protein interaction analysis from Islam et al (2020) indicated that TNFAIP3 is one of the kye hub genes that have good binding affinities with repurposed COVID-19 drug candidates which includes dabrafenib, radicicol and AT-7519. Li et al (2021) observed the bimodal gene expression of TNFAIP3 in various immune cells from severely infected COVID-19 patients.…”
Section: Resultsmentioning
confidence: 88%
“…RNA-Seq data generated through high-throughput Illumina and PacBio sequencing 30 permitted for the identification of eight gene sequences that showed the most stable digital expression levels in five different tissues of T. ravennae : the root, vegetative meristem, inflorescence, flower, and seed tissues (Fig. S 1 ).…”
Section: Resultsmentioning
confidence: 99%
“…It is also a perennial bioenergy feedstock, which forms dense pithy clumps of up to four meters in height and produces biomass of up to 10–14 dry Mg/ha per year 54 . Besides, the whole-genome and transcriptome of T. ravennae have been sequenced by Illumina and PacBio technologies 29 , 30 . Thus, the identification of stable reference genes in T. ravennae is of particular interest for studying gene expression under the different conditions of developmental stages or environmental stresses.…”
Section: Discussionmentioning
confidence: 99%
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“…Unlike qRT-PCR data, within samples technical variation can be normalized without control genes. Some studies have taken advantage of this source of data to identify stably expressed reference genes in various diseases, and have reported its adequacy for this purpose [22][23][24].…”
Section: Introductionmentioning
confidence: 99%